Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq449 98.7 1e-15 seq7 93.3 5e-14 >seq449 Length=50303 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 ||| || || |||||| || ||||| ||||| ||||| | ||| | || ||||| || Sbjct 36773 AGCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGAT 36714 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTC 181921 |||||| || || | |||| | |||| || | |||||| | | |||||| | || Sbjct 36713 GTTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTC 36654 Query 181922 ACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTC 181981 ||||||||||| || || | || | ||||| | |||| ||| ||||||| || || Sbjct 36653 GCCGTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTC 36594 Query 181982 ATCTTTGAGGTTCTTGTGGAAGCA--AGCATA-CATCACTTTCCTCTGCGAAGGCTTGAG 182038 |||||||| | |||||| || ||| ||| || | ||| |||||| || Sbjct 36593 CGACTTGAGGTTGCGCTTGAAGCATGAGAATAGGATC---TTGCGCTGGCCAGGCTTCAG 36537 Query 182039 ACCATCCGCCATATGGGCAATAGAGCGCTTGAGGTCTGC 182077 ||| ||| |||| || || || |||| ||||| || Sbjct 36536 ACCGTCCACCATGCTGGGGATGGATCGCTCCAGGTCAGC 36498 >seq7 Length=421595 Score = 93.3 bits (102), Expect = 5e-14 Identities = 239/362 (66%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 ||||| || || ||| | || || ||||| ||||| || | || ||| | || ||| Sbjct 312508 ACATACCGGGCAGTGTCATTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCG 312449 Query 111785 TTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 || || || || || ||||| |||| | | | |||||| | || || | Sbjct 312448 TTGGTGCCGCGGATGTACGAGCCGG--TGGCACGTATGTTGTGGATGGAGAGGCCGATGC 312391 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | || ||| |||| ||||| ||||||||| | || || ||||||| |||| ||| | Sbjct 312390 CGCCGGCCGACTTGGAGATCACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGG 312331 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 | || | |||| | |||||||| ||||| ||| || | || || || | | Sbjct 312330 AATCGTTCTTGGCACACACCAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGT 312271 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCA 112022 |||||||||| || | ||||| ||||| | | ||||| || ||| || | | Sbjct 312270 TGAAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGCTCAGACATGAGGTGGTACGTGTTGA 312211 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | | | ||| ||||| ||| ||||||||| | || || ||||| | ||||| ||| | Sbjct 312210 TGGCGGCATCGATGTCATCCTTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTGGG 312151 Query 112083 GG 112084 || Sbjct 312150 GG 312149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012114936800