Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq28 125 9e-24 seq7 114 2e-20 seq449 84.2 3e-11 >seq28 Length=264079 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||||||||||||||| || || || ||| ||| || Sbjct 66429 GCAAAGTCGGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 66488 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || | || || ||||| || |||||||| Sbjct 66489 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAAAAGAAGATG 66548 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||||||| || || || | || |||||||||||| Sbjct 66549 CCCTCCACAGCAGCAAAGGCCACTAGGCGCTCAGCAAAG 66587 >seq7 Length=421595 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || || |||||||| |||||||| | || |||||| | || || Sbjct 151350 GCAAAGTCGGTGTGCAGGCCTTCGTCACGAGAGATGAGGACGTTTGAGAAGGAGAGGCCG 151409 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| |||||| || | |||||| || ||||| || |||||||| ||| ||| Sbjct 151410 GGCATGAGCAGCCGCTTTTTGAGCCAGAAGATGGCACAGAAGGAGCCAGAAAAGTGGATG 151469 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 |||||||| || || ||||| | | ||||||||||| Sbjct 151470 CCCTCCACGCAGGCAAACGCGACCAAGCGCTCAGCAAA 151507 Score = 100 bits (110), Expect = 4e-16 Identities = 277/424 (65%), Gaps = 3/424 (1%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| |||| |||||| || || | || | || | Sbjct 314604 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGGGACGTG 314545 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| || | | || |||||| | ||| | ||| || ||||||||| Sbjct 314544 AGCTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCGATGAAG 314485 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || |||||||| ||||| || | || | | |||||| |||||||| ||| || Sbjct 314484 GCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACCGTCTTG 314425 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 || ||| | ||||| ||||| |||| | |||| || || ||| Sbjct 314424 TACAGGGAGCGCAGCTCATCAGGGATGTCCAG---AGCCTGGACTGACCCGTTGGCCGCC 314368 Query 118077 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 |||| | ||| || || ||| || || || | || || | || || Sbjct 314367 ACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCGTGCAGCAGG 314308 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 |||| || || || ||||| |||| || ||| | || ||||| |||| ||| Sbjct 314307 TGCTGGTTCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTGGAGGTG 314248 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 || |||||||||||||| |||||||||| || |||| ||||| || ||||||||||| Sbjct 314247 TAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGGCATGGGC 314188 Query 118257 GCCA 118260 |||| Sbjct 314187 GCCA 314184 >seq449 Length=50303 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 179962 CGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGG 180021 || ||||||||||| ||| |||| ||||| || || || ||| ||| | || ||| Sbjct 35223 CGCAGAGGGAACACGCCGAAGTGGTCACGGCCCACAACGCTGAGGCCACTGATGGCCAGG 35164 Query 180022 GTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CC 180080 | ||| || || |||||||| |||| ||||||||| ||| | || | ||| | | || Sbjct 35163 GCCTTGGCAGAGTCACCCTCTGTCAGGATGAGCGTGCACATGTGCGAGT-TGCGGCCGCC 35105 Query 180081 TGCCTTGTTCGCGTCGTCCAACTTGGGAATACC 180113 || | |||||| ||||||| |||||| || || Sbjct 35104 CGCATCGTTCGCATCGTCCAGCTTGGGGATGCC 35072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415618795480