Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq28 134 2e-26 seq7 125 8e-24 seq449 120 4e-22 seq99 109 6e-19 >seq28 Length=264079 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||||||||| || | || ||||| ||| ||||| |||||||| || || ||||| Sbjct 66587 CTTTGCTGAGCGCCTAGTGGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTT 66528 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || | |||||||||||||| || |||||||| || || ||| |||||||| Sbjct 66527 CTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGA 66468 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| ||||||||||| || ||| || ||||| Sbjct 66467 GCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGC 66429 >seq7 Length=421595 Score = 125 bits (138), Expect = 8e-24 Identities = 175/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||| |||||||| ||||| || | | ||||| || | ||||| || ||| Sbjct 151588 CTCTTTCGTGCCATCCACACAGTGCCCACTGTGGGCAAGAAGGCCAACTGGGCAATCAAG 151529 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | | | | | ||| | ||||||||||| | |||| ||||| || || ||| Sbjct 151528 TGGATC--TCCTCGGAC-CGTACGTTTGCTGAGCGCTTGGTCGCGTTTGCCTGCGTGGAG 151472 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 || ||| ||| ||||| |||||||| || || | |||||||| ||||| |||||| Sbjct 151471 GGCATCCACTTTTCTGGCTCCTTCTGTGCCATCTTCTGGCTCAAAAAGCGGCTGCTCATG 151412 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 94953 || || |||| |||||| |||| || |||||||||||||| || || ||| || ||| Sbjct 151411 CCCGGCCTCTCCTTCTCAAACGTCCTCATCTCTCGTGACGAAGGCCTGCACACCGACTTT 151352 Query 94954 GCG 94956 ||| Sbjct 151351 GCG 151349 Score = 93.3 bits (102), Expect = 5e-14 Identities = 239/362 (66%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| | |||||||||||| | || || || ||| ||||| ||| | | Sbjct 312149 CCCCCAGCACATGCTGATGCGCGTGGCCGTGGGCATCCACAAGGATGACATCGATGCCGC 312208 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | | || ||| || ||||| | | ||||| ||||| | || |||||||| Sbjct 312209 CATCAACACGTACCACCTCATGTCTGAGCGCTGGTTCACGCACGCCTCCCCCACCCTCTT 312268 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| | || || || | ||||| ||||| |||||||| | |||| | || Sbjct 312269 CAACTCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTGGTGTGTGCCAAGAACGA 312328 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || ||| |||| ||||||| || || | ||||||||| ||||| |||| ||| || Sbjct 312329 TTCCATCGACGGCATCTATGACACGCTCAAGGAGTGTGCTGTGATCTCCAAGTCGGCCGG 312388 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGT--ATTCGGGGGACA 104518 || || || | |||||| | | | |||| ||||| || || || || Sbjct 312389 CGGCATCGGCCTCTCCATCCACAACATACGTGCCA--CCGGCTCGTACATCCGCGGCACC 312446 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | ||| || | || ||||| ||||| || || | ||| || || ||| Sbjct 312447 AACGGTACCTCCAACGGTGTTGTGCCCATGCTGCGCGTCTTCAATGACACTGCCCGGTAT 312506 Query 104579 GT 104580 || Sbjct 312507 GT 312508 >seq449 Length=50303 Score = 120 bits (132), Expect = 4e-22 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 168455 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 |||||||| |||||| || ||||| ||||||||||| | ||| | || || ||||| Sbjct 36772 GCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATG 36713 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || |||| |||| | |||| |||| || ||| | | || || | || Sbjct 36712 TTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCG 36653 Query 168575 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 168634 |||||||||||||| | ||| | ||| | | |||| |||| |||| || || || Sbjct 36652 CCGTGGTGGTACGCCGAGTGCTCGGACACATAACCTGCCAGCTGCACCACCTTGATGTCC 36593 Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694 |||||| || | |||||||| | | | | |||||| || |||||| ||||| Sbjct 36592 GACTTGAGGTTGCGCTTGAAGCATGAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCG 36533 Query 168695 TCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTG 168754 ||| ||||| | ||| || |||| || ||| || |||| || ||| |||||| Sbjct 36532 TCCACCATGCTGGGGATGGATCGCTCCAGGTCAGCGCGCGAGAAGAGGATGAGCTCCTTG 36473 Query 168755 T 168755 | Sbjct 36472 T 36472 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 169355 CGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGA 169414 || |||||||| || ||| |||| ||||| || || ||| ||| || || || || Sbjct 35223 CGCAGAGGGAACACGCCGAAGTGGTCACGGCCCACAACGCTGAGGCCACTGATGGCCAGG 35164 Query 169415 GTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGT--ACATTTTCCAGATTGTGCCGTAC 169472 | ||| || ||||||||||| || | ||||||||| |||| | | || | |||| | Sbjct 35163 GCCTTGGCAGAGTCACCCTCTGTCAGGATGAGCGTGCACATGTGCGAGTTGCGGCCG--C 35106 Query 169473 CCGCCTTGTTCGCATCATCCAATTTGGGAATACC 169506 |||| | ||||||||| |||| ||||| || || Sbjct 35105 CCGCATCGTTCGCATCGTCCAGCTTGGGGATGCC 35072 >seq99 Length=163232 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||| |||| Sbjct 95214 GGCTCCTTCTGCGCCATTTACTGGCTGAAGAAGCGAGGCCTCATGCCCGGCCTCACCTTC 95273 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||| ||||| ||||| ||||| ||||| || ||| || |||||| Sbjct 95274 TCCAATGAGCTCATCTCACGTGATGAGGGCCTGCACACCGACTTTGCG 95321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242332504920