Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 259 5e-64 seq28 132 5e-26 seq99 91.5 2e-13 >seq7 Length=421595 Score = 259 bits (286), Expect = 5e-64 Identities = 511/748 (68%), Gaps = 20/748 (3%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 ||||| |||| ||||||||||| |||||||| ||||||||||| |||| | ||| | Sbjct 314610 CGTGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAGG 314551 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 || |||||| | | | |||| | |||||| | ||||| ||||||| ||||||| Sbjct 314550 GACGTGAGCTTGCCGAAGTTGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGTCG 314491 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATG 78366 ||| | || || || || || |||||||| | | | ||| |||||||| | Sbjct 314490 ATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGATCTCCCACACC 314431 Query 78367 GTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGGCT 78426 ||| ||| | || |||||| || |||||||||| || || || ||| ||| Sbjct 314430 GTCTTGTACAGGGAGCGCAGCTCATCAGGGATGTCCAGAGCCTGGACTGACCCGTTGGCC 314371 Query 78427 CGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACC 78486 ||| | || ||||| || | ||||||||| | || | || || | | | Sbjct 314370 GCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCGTGCAGC 314311 Query 78487 AGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTG 78543 |||||| ||| ||| ||| ||||||||| | ||| ||||||| |||||||||| Sbjct 314310 AGGTGCTGGT---TCACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAGATGTTG 314254 Query 78544 GTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | ||||| ||||| ||||| ||||||||| |||| ||||||| ||| || ||||| || Sbjct 314253 GAGGTGTAGGGCTC-AAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCGGTGGG 314195 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCAT--GCGTCTTGATCTCGACCTTTAGG 78660 |||||| || | ||| || || || || | || | ||| | || || | ||| Sbjct 314194 CATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGTTGGCGGC--AATGTCTGCGCGCAGG 314137 Query 78661 CC------GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714 || |||||| || || || ||||||||||| | || || | ||| Sbjct 314136 CCAGCCCAGTCCCAGCGGTCCGAGCCCTTCATGCCCCACATGTCATGCTGCAGCACGCCC 314077 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 | ||| | || || || | | ||||| || | ||||||| |||||| || || ||| Sbjct 314076 TGAGACACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGCCAGCTC-CAT 314018 Query 78775 -GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 ||| ||||||||||| ||| | ||| |||||| ||||||| |||| |||| Sbjct 314017 GGACGTCTTCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCAGCTGCTGCGC 313958 Query 78834 CTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCC 78893 || | | ||| || | | ||| |||| || ||| | || |||||||||||||| || Sbjct 313957 CTCAGGCGAGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCTGGACCCC 313898 Query 78894 GATAGCGATCGGTCGGTGGCGCATGTTG 78921 |||| | || || |||||||||| |||| Sbjct 313897 GATACCAATGGGGCGGTGGCGCAGGTTG 313870 Score = 251 bits (278), Expect = 8e-62 Identities = 505/741 (68%), Gaps = 16/741 (2%) Strand=Plus/Plus Query 20088 TGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCG 20147 |||||||||| || || | ||||| |||||||||||||| |||| ||| || |||| | Sbjct 313875 TGCGCCACCGCCCCATTGGTATCGGGGTCCAGGGCCTGGCTGACGCGTTCCTGCTGCTGG 313934 Query 20148 GCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 || | | || ||| || |||||| |||| ||||||| |||||| ||| | | | Sbjct 313935 GCATGCCCTTTGACTCGCCTGAGGCGCAGCAGCTGAACAAGGACATCTTTGAGTGCATCT 313994 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGC---GAACTCGCCAAAGAGGACGGCCCGTACGAGA 20264 || |||||||||| | | ||| | || || ||||| |||| ||||| || |||| Sbjct 313995 ACTACGCGGCCCT---GAAGACGTCCATGGAGCTGGCCAAGAAGGAGGGCCCCTATGAGA 314051 Query 20265 CGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA--- 20321 | | | || || || | ||| |||| | || |||| |||||||||||| | | Sbjct 314052 CATACCCTGGCTCCCCTGTGTCTCAGGGCGTGCTGCAGCATGACATGTGGGGCATGAAGG 314111 Query 20322 -CTGAGAATGA--GTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCA 20378 || || | | ||| | ||| | || || || |||| | |||| Sbjct 314112 GCTCGGACCGCTGGGACTGGGCTGGCCTGCGCGCAGACATTGCCGCCAACGGCGTGCGCA 314171 Query 20379 ACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACG 20438 ||||| |||| | ||||||||||| ||||| || ||| ||||||| |||| ||||||| Sbjct 314172 ACTCGCTGCTGCTGGCGCCCATGCCCACCGCATCCACCTCCCAGATTCTGGGTAACAACG 314231 Query 20439 AG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 || ||||| ||||| ||||| ||||||||||| |||| || ||| | || |||||| Sbjct 314232 AGTGCTTT-GAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGCTGTCGGGCGAGTTC 314290 Query 20498 GTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAA 20557 | || ||| |||||||| | | |||| || | || | ||||| || | Sbjct 314291 ACGGTCGTGAACCAGCACCTGCTGCACGACCTGTACCGCATGGGCCTGTGGAACCCTGAG 314350 Query 20558 ATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGGATATCCCCCAGAAC 20617 || ||||| || | || ||| |||| |||||||| |||| ||||| | | Sbjct 314351 ATCAAGAACGAGCTGGTGGCGGCCAACGGGTCAGTCCAGGCTCTGGACATCCCTGATGAG 314410 Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAG-AAGAGCATCATCGACATGGC 20676 || | | |||| ||| || ||||| ||| ||| | || | | |||||||| Sbjct 314411 CTGCGCTCCCTGTACAAGACGGTGTGGGAGATCAAGCAGCGTGTGC-TGGTGGACATGGC 314469 Query 20677 GGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCC 20736 || ||||| || |||| |||||||||| ||||||| |||| || |||||| | | || Sbjct 314470 CGCGGATCGTGGGGCCTTCATCGACCAGAGCCAGTCGTTCAACGTGTTCATGCCGGACCC 314529 Query 20737 GAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGG 20796 | | | | ||||| | ||| | || | |||| ||| | ||||| |||||||| || Sbjct 314530 CAACTTCGGCAAGCTCACGTCCCTACACTTTTACGCGTGGAAGAAGGGCCTCAAGACCGG 314589 Query 20797 CATGTACTATCTGCGGACCCG 20817 ||||||||| ||||| || || Sbjct 314590 CATGTACTACCTGCGCACACG 314610 Score = 152 bits (168), Expect = 6e-32 Identities = 253/363 (70%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 79543 ACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCG 79602 || |||||||| |||| ||||| || || ||||||||||| | |||| || | ||| Sbjct 312508 ACATACCGGGCAGTGTCATTGAAGACGCGCAGCATGGGCACAACACCGTTGGAGGTACCG 312449 Query 79603 TTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCC 79662 || || ||| ||| | ||| | || || ||||| | | || |||||||| Sbjct 312448 TTGGTGCCGCGGATGTACGAGCCGGTGGCACGTATGTTGTGGATGGAGAGGCCGATGCCG 312389 Query 79663 CCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAG 79722 |||| | |||||||||| || |||||||||||||| || |||||||| ||||| || Sbjct 312388 CCGGCCGACTTGGAGATCACAGCACACTCCTTGAGCGTGTCATAGATGCCGTCGATGGAA 312329 Query 79723 TCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTG 79782 |||| ||| | |||||||||||| |||| ||| ||| | || |||| |||| Sbjct 312328 TCGTTCTTGGCACACACCAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCGGAGTTG 312269 Query 79783 AAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTG 79842 |||||||| || | ||||||||||| | | ||| || | |||||| ||| Sbjct 312268 AAGAGGGTGGGGGAGGCGTGCGTGAACCAGCGCTCAGACATGAGGTGGTACGT---GTTG 312212 Query 79843 ACGCGCGG----GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898 | | |||| || ||| || ||||||||| || || |||||||| | | || ||| Sbjct 312211 ATG-GCGGCATCGATGTCATCCTTGTGGATGCCCACGGCCACGCGCATCAGCATGTGCTG 312153 Query 79899 GGG 79901 ||| Sbjct 312152 GGG 312150 Score = 145 bits (160), Expect = 8e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 79280 ACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGT 79339 || || |||||| | ||| |||| ||| || || |||| ||||| || ||||| Sbjct 313009 ACTTCTGGTACAGCGCGTCGAAATCCTTGCCCCAGCAGTCGGCGAGGCCAGGCGCCTCGT 312950 Query 79340 GCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGA 79399 ||||| | |||| ||||||||||| ||||| || ||||||||| ||||| || Sbjct 312949 TGGGGCAGAACAGGGACCAGTCCTCGTTGTTCTCCACACGCTCCATGAACAGGTCATTGA 312890 Query 79400 TCCACAGGGCCGTGAA-GAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGC 79458 |||||||| |||| || |||||| || || |||||| | ||| |||||| || Sbjct 312889 TCCACAGG-CCGTAAAAGAGGTCACGCGCGCGTGCCTCCTCCTTGCCGTGGTTCTTGCGT 312831 Query 79459 AGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCC 79518 || || || || || | | ||| |||||||| ||||||| ||||| || || | ||| Sbjct 312830 AGGTCTAGGAACTCAAACACGTCTGCGTGCCAGGGCTCCATGTAGATAGCAAAGGCGCCC 312771 Query 79519 TTGCGCTTGCCGCCGCCCTGGTTGACGTA 79547 ||||||||||| || ||||||| ||||| Sbjct 312770 TTGCGCTTGCCACCACCCTGGTCCACGTA 312742 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||| ||||||| |||| ||||||||| ||||||||| | ||| |||||| || Sbjct 313294 CAGATCGAGACGGGCAACCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCTAAC 313353 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||| ||||| | || | ||||||| ||||||||||| ||||| ||| |||| || | Sbjct 313354 CAGCAGAACCTGGGGACCATCAAGTGCTCCAACCTGTGCACTGAGATCGTGGA-GTACAC 313412 Query 19913 AAGC-CGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA 19971 ||| |||||||||||| ||||| || ||||||||| | |||||| || ||||| Sbjct 313413 GAGCGAGGACGAGACTGCAGTGTGCAACCTGGCGTCCATCGCGCTGCCGCGCTTTGTCAA 313472 Query 19972 GG 19973 || Sbjct 313473 GG 313474 Score = 107 bits (118), Expect = 2e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||||||| || ||| ||| |||||||| |||||||| || ||||||||| Sbjct 151489 GCGTTTGCCTGCGTGGAGGGCATCCACTTTTCTGGCTCCTTCTGTGCCATCTTCTGGCTC 151430 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| |||||||| ||||| ||||| |||| || || || || ||||| Sbjct 151429 AAAAAGCGGCTGCTCATGCCCGGCCTCTCCTTCTCAAACGTCCTCATCTCTCGTGACGAA 151370 Query 60111 GGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTA 60142 ||||| || || ||||| ||| ||||| || Sbjct 151369 GGCCTGCACACCGACTTTGC-GTGCACGCTGTA 151338 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||||||||| | || ||||| |||||| |||| || | ||| ||| |||| | Sbjct 312243 TTCACGCACGCCTCCCCCACCCTCTTCAACTCCGGCACCCCCCGCCCCCAGCTGTCCTCC 312302 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| ||| | ||| | || ||| || |||||||| || |||||||||||| Sbjct 312303 TGCTTCCTGGTGTGTGCCAAGAACGATTCCATCGACGGCATCTATGACACGCTCAAGGAG 312362 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCG 19375 || || |||||||||| | |||| || ||||| || | | || || || | Sbjct 312363 TGTGCTGTGATCTCCAAGTCGGCCGGCGGCATCGGCCTCTCCATCCACAACATACGTGCC 312422 Query 19376 AGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGC 19435 | || | ||| || || ||||| || ||||| | || || ||||| ||| Sbjct 312423 ACCGGCTCGTACATCCGCGGCACCAACGGTACCTCCAACGGTGTTGTGCCCATGCTGCGC 312482 Query 19436 GTCTTCAACAACACGGCCAGGTACGT 19461 |||||||| |||| ||| |||| || Sbjct 312483 GTCTTCAATGACACTGCCCGGTATGT 312508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||||||||||||| || ||||||||| ||| | ||| | ||| || |||||| Sbjct 313448 GACGCCAGGTTGCACACTGCAGTCTCGTCCTCGCTCGTGTACTCCACGATCTCAGTGCAC 313389 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || || |||||||||| || | ||||| |||||| ||| ||| || | |||| Sbjct 313388 AGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTAGACTTGCGGTTGCACGAGTCC 313329 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||||| ||||||||| | || ||||| | ||| Sbjct 313328 TTGTACAGCATGTACGGGTTGCCCGTCTCGATCTG 313294 >seq28 Length=264079 Score = 132 bits (146), Expect = 5e-26 Identities = 127/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| | || || | || ||||| ||| ||||| || |||||||| || ||||| || Sbjct 66586 TTTGCTGAGCGCCTAGTGGCCTTTGC-TGCTGTGGAGGGCATCTTCTTTTCCGGCTCCTT 66528 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| | || ||||||||||| ||||||||||||||||| ||||||| || |||||||| Sbjct 66527 CTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTTTCCAACGA 66468 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||| || ||||| ||||||||||| || || |||||| Sbjct 66467 GCTCATCTCCCGTGACGAGGGCCTGCACACCGACTTTGCA 66428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| || ||||||||||||| |||||| || | || ||||||||||||||||||||| Sbjct 65824 AACCCCTTTGACTGGATGGAGATCATCTCCCTGCAGGGCAAGACCAACTTCTTTGAGAAG 65765 Query 60405 CGGGTCGGGGATTA 60418 ||||| ||||| || Sbjct 65764 CGGGTGGGGGAGTA 65751 >seq99 Length=163232 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 60024 GGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTC 60083 ||||| ||||| || |||| |||||| || ||||| ||||||||||| ||||| | ||| Sbjct 95214 GGCTCCTTCTGCGCCATTTACTGGCTGAAGAAGCGAGGCCTCATGCCCGGCCTCACCTTC 95273 Query 60084 TCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| || || || || |||||||| || Sbjct 95274 TCCAATGAGCTCATCTCACGTGATGAGGGCCTGCA 95308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507432333520