Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 219 5e-52 seq449 188 8e-43 seq28 86.0 7e-12 >seq7 Length=421595 Score = 219 bits (242), Expect = 5e-52 Identities = 562/829 (68%), Gaps = 55/829 (7%) Strand=Plus/Plus Query 55130 GTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAG--CGGCGC 55187 ||||| || ||||||||| | |||||||| || || ||||| ||||| || || Sbjct 313805 GTGACCCGCAACCTGAACAAGATCATCGACGTCAACTATTACCCTG-TGAAGACCGCCGA 313863 Query 55188 GCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCT 55247 || |||||||| || ||||| ||||| | ||||| || |||||| |||| ||| | Sbjct 313864 GCGC-TCCAACCTGCGCCACCGCCCCATTGGTATCGGGGTCCAGGGCCTGGCTGACGCGT 313922 Query 55248 TCATGATGCTCGGATTGCCCTTCGACTCGGAACCTGCT-CG-AGAAATT-AACCAGGACA 55304 || || |||| || ||||||| |||||| |||| || || | | ||| |||||| Sbjct 313923 TCCTGCTGCTGGGCATGCCCTTTGACTCG---CCTGAGGCGCAGCAGCTGAACAAGGACA 313979 Query 55305 TCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAG 55363 |||| ||| ||||||||| || || || || ||| | ||||| | || ||| Sbjct 313980 TCTTTGAGT-GCATCTACTACGCGGCCCTGAAGACGTCCATGGAGCTGGCCAAGAAGGAG 314038 Query 55364 GGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACA-AGGGACTTCTCCAGTTCGATCT 55422 || |||| ||||| | || || || || | || | |||| | || ||| || | Sbjct 314039 GGCCCCTATGAGACATACCCTGGCTCCCCTG-TGTCTCAGGGCGTGCTGCAGCATGACAT 314097 Query 55423 ATGGGGCAAG------TCTGACCCCATGT--TTGACAAGT-TGAA-GCATGACATTCACT 55472 ||||||| | || |||| | | | | | | || ||| |||||| | Sbjct 314098 GTGGGGCATGAAGGGCTCGGACCGCTGGGACTGGGCTGGCCTGCGCGCA-GACATTGCCG 314156 Query 55473 TGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGA 55532 ||| | |||||||| ||||| ||||||| ||||| ||||| || || | |||| Sbjct 314157 CCAACGGCGTGCGCAACTCGCTGCTGCTGGCGCCCATGCCCACCGCATCCACCTCCCAGA 314216 Query 55533 TCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCC 55592 | |||| ||||||||| || ||||| ||||| ||||||||||| ||||||| | Sbjct 314217 TTCTGGGTAACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACGTGCGCCGCGTGC 314276 Query 55593 TAGCAGGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCA 55649 | | || ||||| ||| || ||| ||||||| | | |||||| | || Sbjct 314277 TGTCGGGCGAGTTCACGGTCGTG---AACCAGCACCTGCTGCACGACCTGTACCGCATGG 314333 Query 55650 ACAAGTGGAACCCGCAGATCAAGACGGATATTGT-GCGG--AACGGGGGGTCCGTCCAGA 55706 | ||||||||| ||||||||| || | || |||| ||| ||||| |||||| Sbjct 314334 GCCTGTGGAACCCTGAGATCAAGAACGAGCTGGTGGCGGCCAAC---GGGTCAGTCCAGG 314390 Query 55707 ATCTGGAGATTCCT------CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTC 55760 |||||| || ||| ||||| ||| | ||| ||||||||||||||| Sbjct 314391 CTCTGGACATCCCTGATGAGCTGCG-CTC-----CCTGTACAAGACGGTGTGGGAGAT-- 314442 Query 55761 CACAGAAGAGT---CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCC 55817 || || || || ||| | |||||| || |||||||| || | |||||||||| || Sbjct 314443 CA-AGCAGCGTGTGCTGGTGGACATGGCCGCGGATCGTGGGGCCTTCATCGACCAGAGCC 314501 Query 55818 AGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTT 55877 |||| | ||| | |||||| | | || | | |||| | | || | ||||||| Sbjct 314502 AGTCGTTCAACGTGTTCATGCCGGACCCCAACTTCGGCAAGCTCACGTCCCTACACTTTT 314561 Query 55878 ACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||| |||||||||||| |||||||| || |||||||| ||||| || || Sbjct 314562 ACGCGTGGAAGAAGGGCCTCAAGACCGGCATGTACTACCTGCGCACACG 314610 Score = 138 bits (152), Expect = 1e-27 Identities = 196/271 (72%), Gaps = 10/271 (4%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || ||||||||| | || ||||| |||||| | || || | ||| ||| |||| | Sbjct 312243 TTCACGCACGCCTCCCCCACCCTCTTCAACTCCGGCACCCCCCGCCCCCAGCTGTCCTCC 312302 Query 53333 TGCTTCCTGGTG---GCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || | ||| ||| || |||||||||||||| || ||||||||| Sbjct 312303 TGCTTCCTGGTGTGTGCCAAGAACGAT---TCCATCGACGGCATCTATGACACGCTCAAG 312359 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCC 53447 |||||||| |||||||||| | | || || ||||| | |||| | | | ||| | | Sbjct 312360 GAGTGTGCTGTGATCTCCAAGTCGGCCGGCGGCATCGGCCTCTCCA-TCCAC-AACATAC 312417 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 |||| | |||| | ||| || || ||||| | || | || | ||||| |||| Sbjct 312418 GTGCCACCGGCTCGTACATCCGCGGCACCAACGGTACCTCCAACGGTGTTGTGCCCATGC 312477 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 | ||||||||||| |||| |||||||| || Sbjct 312478 TGCGCGTCTTCAATGACACTGCCCGGTATGT 312508 Score = 131 bits (144), Expect = 2e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||||||||| ||||||||||| | || || |||||| | ||||| ||| Sbjct 312742 TACGTGGACCAGGGTGGTGGCAAGCGCAAGGGCGCCTTTGCTATCTACATGGAGCCCTGG 312801 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC 53653 ||||| ||| | | ||||| || || || || ||| || || | || ||| ||| Sbjct 312802 CACGCAGACGTGTTTGAGTTCCTAGACCTACGCAAGAACCACGGCAAGGAGGAGGCACGC 312861 Query 53654 TGCCGTGACCT-GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 |||||||| ||||| || |||||||| ||||| |||||| | |||||||| Sbjct 312862 GCGCGTGACCTCTTTTACGGC-CTGTGGATCAATGACCTGTTCATGGAGCGTGTGGAGAA 312920 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC 53758 ||||||| |||| |||| | ||||| |||||| || |||||| Sbjct 312921 CAACGAGGACTGGTCCCTGTTCTGCCCCAACGAGGCGCCTGGCCTC 312966 >seq449 Length=50303 Score = 188 bits (208), Expect = 8e-43 Identities = 217/292 (74%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||| ||||||| |||| |||||| |||||||||||||| ||||||||| |||||| Sbjct 36799 CGGGTGTAGATGTAACGGGGGCTGGCAGCATCCTTGCCACCCTGCAGCCGCGTGCCAAAC 36740 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 || || |||||| | || ||||||| |||||||| |||||| || | ||| |||| || Sbjct 36739 TGACCTGAGGGCACCAGCAGGTTGATGTTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTG 36680 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || ||| | ||| ||| || |||||||| ||||||| ||||| | | || Sbjct 36679 ATGATGGTGGCGGACAGGGACGCCTCGCCGTGGTGGTACGCCGAGTGCTCGGACACATAA 36620 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || |||| |||| ||||||| ||||||| | | ||||| ||||| || | | | | Sbjct 36619 CCTGCCAGCTGCACCACCTTGATGTCCGACTTGAGGTTGCGCTTGAAGCATGAGAATAGG 36560 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 | |||||||||| || |||| ||||||||||| | || || || |||| Sbjct 36559 ATCTTGCGCTGGCCAGGCTTCAGACCGTCCACCATGCTGGGGATGGATCGCT 36508 Score = 174 bits (192), Expect = 2e-38 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 || || | ||| ||| | |||||||| | ||| ||||||||||||||||| || ||| Sbjct 36808 GGCGCCATGCGGGTGTAGATGTAACGGGGGCTGGCAGCATCCTTGCCACCCTGCAGCCGC 36749 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 || || || || || ||| ||| ||||| | |||||||| ||||||||||| || Sbjct 36748 GTGCCAAACTGACCTGAGGGCACCAGCAGGTTGATGTTGTTGGAGCCCACAAAGTCCTGT 36689 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||| ||||| || || | ||| |||||| || ||||| ||||||| ||||| Sbjct 36688 GCCAGGTTGATGATGGTGGCGGACAGGGACGCCTCGCCGTGGTGGTACGCCGAGTGCTCG 36629 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAG 117532 | ||| || || |||||||| ||||||| ||||| ||| | ||||| ||||| ||| Sbjct 36628 GACACATAACCTGCCAGCTGCACCACCTTGATGTCCGACTTGAGGTTGCGCTTGAAGCAT 36569 Query 117533 GCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGC 117592 | | | | ||||||||| | ||||||||||| ||| ||| | ||||| || ||| Sbjct 36568 GAGAATAGGATCTTGCGCTGGCCAGGCTTCAGACCGTCCACCATGCTGGGGATGGATCGC 36509 Query 117593 T 117593 | Sbjct 36508 T 36508 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 118198 CCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAG 118257 |||||| || |||||||| || | |||||||||||||||||| | ||| || || || Sbjct 35224 CCGCAGAGGGAACACGCCGAAGTGGTCACGGCCCACAACGCTGAGGCCACTGATGGCCAG 35165 Query 118258 GGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCAC 118297 |||||| || ||||||||||| || | || || |||||| Sbjct 35164 GGCCTTGGCAGAGTCACCCTCTGTCAGGATGAGCGTGCAC 35125 >seq28 Length=264079 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | ||||| ||||| || ||||||||||| | ||| ||||||| ||| Sbjct 66468 TCGTTGGAAAAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAG 66527 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCG 74899 ||||| || ||||||||||| || ||| |||||||| || ||||| Sbjct 66528 AAGGAGCCGGAAAAGAAGATGCCCTCCACAGCAGCAAAGGCCACTAGGCG 66577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198673773400