Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 262 4e-65 seq449 199 5e-46 seq503 91.5 2e-13 seq2016 86.0 7e-12 seq493 86.0 7e-12 seq2326 84.2 2e-11 seq533 84.2 2e-11 seq67 84.2 2e-11 >seq7 Length=421595 Score = 262 bits (290), Expect = 4e-65 Identities = 560/819 (68%), Gaps = 27/819 (3%) Strand=Plus/Minus Query 80034 CCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 ||| || ||||| ||||||||||| |||||||||||||||||||| |||| | ||| | Sbjct 314611 CCGTGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAAAAGTGTAG 314552 Query 80094 AGAACTGAGCTTCGC-AAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGAC 80152 || ||||||| | |||| |||||| | |||||| | ||| | ||||| ||| Sbjct 314551 GGACGTGAGCTTGCCGAAGT-TGGGGTCCGGCATGAACACGTTGAACGACTGGCTCTGGT 314493 Query 80153 AGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTG-ACTTTTGTGGAATTTCCCAT 80211 |||||| ||||||||||| || ||||| || | | || | | || | ||||| Sbjct 314492 CGATGAAGGCCCCACGATCCGCGGCCATGTCCACCAGCACACGCTGCTTGA-TCTCCCAC 314434 Query 80212 ACTGTACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCG 80271 || || |||| || ||||| || || ||||||||| || || || | ||| Sbjct 314433 ACCGTCTTGTACAGGGAGCGCAGCTCATCAGGGATGTCCAGAGCCTGGAC--TGAC-CCG 314377 Query 80272 T---CCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCT 80328 | || || | | || || | |||| |||| | || | || ||| || Sbjct 314376 TTGGCCGCCACCAGCTCGTTCTTGATCTCAGGGTTCCACAGGCCCATGCGGTACAGGTCG 314317 Query 80329 TTCACAAGGTGCTTGTTAATCATGACA---AACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 | || ||||||| ||| || ||| ||||| |||| || ||| |||| || Sbjct 314316 TGCAGCAGGTGCTGGTT---CACGACCGTGAACTCGCCCGACAGCACGCGGCGCACGTAG 314260 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||||| |||||||| ||||||||| || || ||||| | ||| || Sbjct 314259 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTACCCAGAATCTGGGAGGTGGATGCG 314200 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGT--GCTTCTTGATATCCTCGC 80503 || ||||| || | | || ||| || || |||| ||||| || | || || ||| Sbjct 314199 GTGGGCATGGGCGCCAGCAGCAGCGAGTTGCGCACGCCGTTGGCGGCA--ATGTCTGCGC 314142 Query 80504 GCAAATCTGACCAAAA--ATCAACCCCAACGCTG--TGACCCCACATGTCGTGCTGCAAG 80559 ||| | | ||| | | || | | || || ||||||||||| ||||||| Sbjct 314141 GCAGGCCAGCCCAGTCCCAGCGGTCCGAGCCCTTCATG-CCCCACATGTCATGCTGCAGC 314083 Query 80560 ATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGC 80619 | ||||| ||| | || || || | | | ||||| || ||||||||| ||||||||||| Sbjct 314082 ACGCCCTGAGACACAGGGGAGCCAGGGTATGTCTCATAGGGGCCCTCCTTCTTGGCCAGC 314023 Query 80620 TCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCG 80679 || ||| | | |||||||||| || ||||||||||||| | ||||||||| | | Sbjct 314022 TCCATGGACGTCTTCAGGGCCGCGTAGTAGATGCACTCAAAGATGTCCTTGTTCAG-CTG 313964 Query 80680 C-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 | |||||| || ||| || | || ||||| || || |||| |||||||||||||||| Sbjct 313963 CTGCGCCTCAGGCGAGTCAAAGGGCATGCCCAGCAGCAGGAACGCGTCAGCCAGGCCCTG 313904 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 || ||||| | || |||||||||||| ||| || |||||||| | | ||||| Sbjct 313903 GACCCCGATACCAATGGGGCGGTGGCGCAGGTTGGAGCGCTCGGCGGTCTTCACAGGGTA 313844 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 | |||| ||||||| |||||||||||| || || Sbjct 313843 ATAGTTGACGTCGATGATCTTGTTCAGGTTGCGGGTCAC 313805 >seq449 Length=50303 Score = 199 bits (220), Expect = 5e-46 Identities = 247/336 (74%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || | ||| |||||| || |||||| ||||||||| | ||| | Sbjct 36508 AGCGATCCATCCCCAGCATGGTGGACGGTCTGAAGCCTGGCCAGCGCAAGATCCTATTCT 36567 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGT--GACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | ||| ||||| ||||| | ||| ||||| ||||||| ||||||| | || || || Sbjct 36568 CATGCTTCAAGCGCAACCT--CAAGTCGGACATCAAGGTGGTGCAGCTGGCAGGTTATGT 36625 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | ||||| |||| || ||||||||||||||||| || | |||||| ||||||| Sbjct 36626 GTCCGAGCACTCGGCGTACCACCACGGCGAGGCGTCCCTGTCCGCCACCATCATCAACCT 36685 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||| ||||||| || | || ||| | ||| | || | ||| || || |||||||| Sbjct 36686 GGCACAGGACTTTGTGGGCTCCAACAACATCAACCTGCTGGTGCCCTCAGGTCAGTTTGG 36745 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC 32258 || ||||| ||||||||||||||||| ||| |||||||||||| |||||| | || Sbjct 36746 CACGCGGCTGCAGGGTGGCAAGGATGCTGCCAGCCCCCGTTACATCTACACCCGCATGGC 36805 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGA 32294 || |||||| | | ||| || | ||||||| Sbjct 36806 GCCCCTCACGCGCCACCTGTTCAACGAGGCGGACGA 36841 >seq503 Length=44646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || |||||||| ||||| || ||||| | || Sbjct 44511 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 44570 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 44571 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 44630 Query 27628 GGTGG 27632 ||||| Sbjct 44631 GGTGG 44635 >seq2016 Length=2168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 1564 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1505 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 1504 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1445 Query 27628 GGTGG 27632 ||||| Sbjct 1444 GGTGG 1440 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 1945 GGTATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1886 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 1885 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1826 Query 27628 GGTGG 27632 ||||| Sbjct 1825 GGTGG 1821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| Sbjct 1819 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCA 1760 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| || | ||| || || |||||||||||||| Sbjct 1759 GACACCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGG 1716 >seq493 Length=45929 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 45575 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 45634 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 45635 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 45694 Query 27628 GGTGG 27632 ||||| Sbjct 45695 GGTGG 45699 >seq2326 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||| | Sbjct 224 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 165 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||| || || |||||||||||||| Sbjct 164 GACATGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGG 121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||| | Sbjct 644 ATGCAGATCTTCGTCAAGACACTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 585 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||| || || |||||||||||||| Sbjct 584 GACACGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGG 541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||| | Sbjct 1013 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 954 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||| || || |||||||||||||| Sbjct 953 GACACGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGG 910 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 770 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 711 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 710 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 651 Query 27628 GGTGG 27632 ||||| Sbjct 650 GGTGG 646 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 1139 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1080 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 1079 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 1020 Query 27628 GGTGG 27632 ||||| Sbjct 1019 GGTGG 1015 >seq533 Length=40786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||| | Sbjct 40473 ATGCAGATCTTCGTCAAGACACTGACCGGCAAGACCATCACCCTGGAGGTCGAGTCATCT 40414 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| ||||| || || |||||||||||||| Sbjct 40413 GACACGATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGG 40370 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 40599 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 40540 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || | || || ||| Sbjct 40539 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTGCGC 40480 Query 27628 GGTGG 27632 ||||| Sbjct 40479 GGTGG 40475 >seq67 Length=188910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || |||||||| ||||| || ||||| | || Sbjct 176637 GGCATCCCGCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 176578 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || || Sbjct 176577 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTCGTGCTGCGCCTGCG 176519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292342546960