Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1186 327 1e-84 >seq1186 Length=9024 Score = 327 bits (362), Expect = 1e-84 Identities = 350/460 (76%), Gaps = 2/460 (0%) Strand=Plus/Minus Query 176642 TAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAG 176701 |||||||||||||||| ||| | || || || ||||| |||||||| || | ||||||| Sbjct 5900 TAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAG 5841 Query 176702 CAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCAC 176761 | |||||||| | || |||||||| | | | || ||||| |||||||||||| Sbjct 5840 CTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAG 5781 Query 176762 AAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACG 176821 ||| |||||||| ||||| ||||||||||| || |||||||| ||||||||||||| Sbjct 5780 CTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 5721 Query 176822 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACT 176881 |||||||||||||| | |||||||| || ||||| ||||| ||||| | | |||| Sbjct 5720 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACT 5661 Query 176882 TCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAA 176941 ||||| | || || | |||||||| || || |||||||| || | ||| | | || | Sbjct 5660 TCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTATCAACTA 5601 Query 176942 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTC-TGGTAAA 177000 |||| |||||| | ||||| ||||||||||||||||| || ||||| ||| ||| Sbjct 5600 TGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGAC-TCTCAAGGTCGT 5542 Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || | || |||| || ||| | |||||||| ||| | |||||||| || ||||| Sbjct 5541 GTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTAATGCAT 5482 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 || ||||| |||||||||||||| || ||| | ||| ||| Sbjct 5481 GAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTG 5442 Score = 181 bits (200), Expect = 1e-40 Identities = 251/349 (72%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 || ||| ||||| |||| ||| | ||| | | ||| | |||||||| ||||| || Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGTTGCATTTATTGCAGCACC 176231 ||||| || ||| | || ||| | | ||| || ||| | ||||| || || || || Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 ||||| || ||||| ||||| || || ||||| | || || || | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||||||| | || || || |||| | || ||||| ||||| |||||||||||||||| Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 ||||||||||| | ||||||| ||| | ||||| || || || |||||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAA 176460 | ||||||| | | ||||||| ||||||||| || | |||||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAA 8475 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 176479 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTC 176538 |||||||| |||||| |||||| |||||||| |||||| |||| || | || || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 176539 CTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || |||| || |||||||||| ||||||||||| ||||||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCT 8065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603475291858560