Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2016 104 5e-17 seq493 104 5e-17 seq2326 98.7 2e-15 seq533 98.7 2e-15 seq503 95.1 3e-14 seq67 89.7 1e-12 >seq2016 Length=2168 Score = 104 bits (114), Expect = 5e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 1455 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1514 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| |||| ||| Sbjct 1515 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATACCT 1565 Score = 104 bits (114), Expect = 5e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 1836 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1895 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| |||| ||| Sbjct 1896 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATACCT 1946 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || ||||| || |||||||| ||| |||||||| Sbjct 1716 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCTGAGGACTCAACCTCA 1775 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 1776 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1819 >seq493 Length=45929 Score = 104 bits (114), Expect = 5e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 45684 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 45625 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| |||| ||| Sbjct 45624 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCT 45574 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || ||||| ||||||||||| || || ||||| Sbjct 45804 CCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCTGAAGACTCGACCTCA 45745 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 45744 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 45701 >seq2326 Length=1360 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 661 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 720 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | ||| Sbjct 721 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 1030 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 1089 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | ||| Sbjct 1090 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 1140 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || ||||| |||||||| || ||||| Sbjct 541 CCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATCGTGTCAGATGACTCGACCTCC 600 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 601 AGGGTGATGGTCTTGCCGGTCAGTGTCTTGACGAAGATCTGCAT 644 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || ||||| |||||||| || ||||| Sbjct 910 CCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATCGTGTCAGATGACTCGACCTCC 969 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 970 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1013 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || ||||| ||||||| || ||||| Sbjct 121 CCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATCATGTCAGATGACTCGACCTCC 180 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 181 AGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 224 >seq533 Length=40786 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 40113 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 40172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | ||| Sbjct 40173 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40223 Score = 98.7 bits (108), Expect = 2e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 40490 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 40549 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| |||||||| ||||| || |||||||| || | ||| Sbjct 40550 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 40600 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || ||||| || ||||| |||||||| || ||||| Sbjct 40370 CCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATCGTGTCAGATGACTCGACCTCC 40429 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | |||||| Sbjct 40430 AGGGTGATGGTCTTGCCGGTCAGTGTCTTGACGAAGATCTGCAT 40473 >seq503 Length=44646 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 44620 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 44561 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| || ||||| ||||| || |||||||| || | ||| Sbjct 44560 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 44510 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| || |||||||| ||||| ||||| ||| || ||||| Sbjct 44312 CCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATAGTGTCGGAGGACTCCACCTCC 44253 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 || ||||||||||| ||||| || ||||| || || | ||| Sbjct 44252 AGGGTGATCGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 44212 >seq67 Length=188910 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 176528 AGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 176587 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAANNCCT 211013 |||||||||||||| || ||||| || || || |||||||| || | ||| Sbjct 176588 TCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGCGGGATGCCT 176638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159114380808545