Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1367 93.3 1e-13 seq471 84.2 5e-11 seq67 84.2 5e-11 >seq1367 Length=6375 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 928 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 986 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| || ||||||||||||||| |||| ||| |||| Sbjct 987 CAGTGAGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAATG 1031 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| |||||||||||||| |||||||||| | | | Sbjct 1588 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATAATCCACCGCTTGTGCGGGTTC 1529 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || | | || | || Sbjct 1528 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGAGACTTAATGC 1469 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1468 GTTAGCT 1462 >seq471 Length=47721 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 225608 TACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGT 225667 |||| |||||||| |||||||| ||||||||| ||||||||||| || | ||||| | Sbjct 3391 TACCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCGGAAGACTCCACCT 3450 Query 225668 CTAACGTGATCGTCTTGCCCGTCA 225691 | | ||||| ||||||||||||| Sbjct 3451 CAAGGGTGATAGTCTTGCCCGTCA 3474 >seq67 Length=188910 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||| ||||||||||| ||||| ||||||||| || || ||||| |||| ||| || || Sbjct 177126 ACCCTCCTTGTCTTGAATCTTCTGCTTCACATTCTCAATTGTGTCGGAGGATTCGACTTC 177185 Query 225669 TAACGTGATCGTCTTGCCCGT 225689 ||||||||| |||||||| || Sbjct 177186 TAACGTGATGGTCTTGCCTGT 177206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192492497517902