Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1134 553 2e-152 seq1186 365 6e-96 seq681 118 1e-21 >seq1134 Length=9887 Score = 553 bits (612), Expect = 2e-152 Identities = 738/1023 (72%), Gaps = 2/1023 (0%) Strand=Plus/Minus Query 185958 TGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 186017 |||||||||| | ||||||||| | | ||||| || || || || || ||||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 7877 Query 186018 GGATTACTTCTTTTTCCCAC-TGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAAC 186076 || ||| || || |||||| |||||| | ||| | ||||| ||| | ||||| ||||| Sbjct 7876 GGTTTA-TTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAAC 7818 Query 186077 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTT 186136 |||||||| ||||| || || || || || |||||||| | || ||| ||| || Sbjct 7817 ATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACTT 7758 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 186196 | || ||||| || |||||||||||| || |||||| || || |||||| | | || Sbjct 7757 CTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTATG 7698 Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256 ||||||||| | ||||| ||| | | || ||||||||||| || || | ||| ||| Sbjct 7697 GGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTTT 7638 Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316 || || | ||||| || |||| | | || ||||||||| | || || |||||||| Sbjct 7637 CGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTGC 7578 Query 186317 TCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTT 186376 ||| ||| | ||||| ||||| || || ||||| || | || || |||| || Sbjct 7577 GCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGTATT 7518 Query 186377 TGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTT 186436 || ||||||| | || |||||| | || || || ||||||||||| || || Sbjct 7517 CGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAGTTT 7458 Query 186437 TGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTT 186496 ||| || ||||||||||| | || | | ||| |||| || |||||||||||||| | Sbjct 7457 TGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGACTCT 7398 Query 186497 GAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAAT 186556 || |||||||||||||||||||| || ||| | | |||| |||| | | | ||||| Sbjct 7397 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCAAT 7338 Query 186557 CCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAA 186616 || |||| ||||||||||| || | | |||||||| || || ||||| ||| Sbjct 7337 TCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTTCCG 7278 Query 186617 AGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTG 186676 || ||| | | || |||| |||||||| || || ||||| ||||| ||||||||||| Sbjct 7277 TGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATTCTG 7218 Query 186677 GTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTT 186736 ||||||||| ||||| | || ||| || || || ||| | || ||||||||||| || Sbjct 7217 GTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCTATT 7158 Query 186737 TGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCT 186796 || || |||| |||||||||| | | ||||| | ||||| | ||| | ||||| Sbjct 7157 CGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAACCT 7098 Query 186797 TCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGAC 186856 | || ||||| ||||| |||||| | |||| || || ||||||||||| || || Sbjct 7097 AAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGAAAC 7038 Query 186857 GTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGA 186916 |||||||| || |||||| |||| ||||||||| | ||||| |||||||| | || Sbjct 7037 ATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCAAGA 6978 Query 186917 TCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTG 186976 |||||||| ||| || ||||| ||||||||||| || || | || |||||||| | Sbjct 6977 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTTTA 6918 Query 186977 ATA 186979 ||| Sbjct 6917 ATA 6915 >seq1186 Length=9024 Score = 365 bits (404), Expect = 6e-96 Identities = 373/484 (77%), Gaps = 2/484 (0%) Strand=Plus/Minus Query 183718 AACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTG 183777 || ||| | |||||||| ||||||||| | ||||| |||||||| || |||||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 183778 TTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCT 183837 ||| || ||||||||||| | || ||||| || | | |||||||| ||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 183838 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCT 183897 || ||| ||| ||||||||||||||||||||||||||| || |||||||| || ||| Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 183898 GCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCT 183957 || || || |||||||||||| | |||||||| || ||||| || ||||| |||||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 183958 CTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTT 184017 | ||||||||| | |||||||||||||| || | || |||||||| ||| | ||| || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT-TT 5609 Query 184018 AGCA-CTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCA 184076 | || ||||||| || ||| | || || || |||||||||||||| | | || ||| Sbjct 5608 ATCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCA 5549 Query 184077 AGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGT 184136 ||||||||| | ||||| ||||| ||| | ||||||||||| | || ||||| || Sbjct 5548 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 184137 GATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCCACTCC 184196 ||||| || ||||| ||||||||||||||||| ||| | ||| ||| ||| | || | Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTC 5429 Query 184197 TGTG 184200 |||| Sbjct 5428 TGTG 5425 Score = 250 bits (276), Expect = 3e-61 Identities = 277/367 (75%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 |||||||| ||||| || ||| | ||||| | || | |||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || ||||| || |||| || |||| |||||| | || ||| |||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 |||||| |||||||| || ||||| || || ||| |||| || | | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 ||||||| ||||||| ||| | ||| | || ||||| || || | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||||| || || || |||||| | || |||||||||||||||||| | | || Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||||| || | || ||| ||| |||||||| |||||||||||||| |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 183555 TCTCGGT 183561 | | ||| Sbjct 8463 TTTAGGT 8457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 183562 ATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTC 183621 |||||||| |||||| ||||||||| || || || ||||||||||| ||||| ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 183622 CTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 | |||| ||| |||||||||||||||| ||| |||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 118 bits (130), Expect = 1e-21 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 183725 TGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTG 183784 || ||| | | ||||||||| | ||||| |||||||| ||||||||||| | ||| || Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 183785 CAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCAC 183844 || |||||||||| | || ||||| || | | |||||||| ||||| || ||| Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAG 3145 Query 183845 AGAACTATGGTTACAAGTTCGGTCAAGAAGA----AGAGACCTACAACATTGTCGC 183896 ||| ||||||||||||||||||||| || ||| || |||||||| || || Sbjct 3144 CTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622050703695960