Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1134 526 2e-144 seq1186 365 5e-96 seq681 95.1 1e-14 >seq1134 Length=9887 Score = 526 bits (582), Expect = 2e-144 Identities = 734/1026 (72%), Gaps = 10/1026 (1%) Strand=Plus/Minus Query 165149 TTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTC 165208 ||||||||||| | || |||||| | |||||||||||| || || || ||||| Sbjct 7937 TTGGTTCGATGACGCAGATGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 7878 Query 165209 TGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTA 165267 || || || || |||||| |||||| |||| | || |||||| | ||||| || | Sbjct 7877 AGGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAA 7819 Query 165268 CTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACT 165327 | || || || ||||| || || || | || | ||| || | || ||| |||| Sbjct 7818 CATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACT 7759 Query 165328 TTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTAT 165387 | | || || || ||||| ||||| || || |||||| || || ||||| || ||| Sbjct 7758 TCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTAT 7699 Query 165388 GGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTT 165447 |||||||||| | ||||| || || | || |||| |||||| || || | ||| ||| Sbjct 7698 GGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTT 7639 Query 165448 TTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGG 165507 | || || | ||||| || |||| | || ||||||||| | || || |||||| | | Sbjct 7638 TCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTG 7579 Query 165508 CACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCT 165563 | || || ||| | ||||||||||| || || |||||||| | || ||| || Sbjct 7578 CGCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCT 7523 Query 165564 GTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCG 165623 |||||||| ||| || | || || ||| | || ||||| |||||||||||||| Sbjct 7522 GTATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCA 7463 Query 165624 TCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGG 165683 || || || |||||||||||||| || | || ||| |||| || ||||| |||||| Sbjct 7462 AGTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGG 7403 Query 165684 ACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCT 165743 || || || || || ||||||||||| || || ||| | ||||| | || || | | | Sbjct 7402 ACTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGT 7343 Query 165744 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACT 165803 || ||||| |||| || ||||| || || || | ||||||||||| || |||||| Sbjct 7342 GCAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACT 7283 Query 165804 TTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGT 165863 ||| || || | || || | || |||||||| || ||||| ||||||||| | Sbjct 7282 TTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGA 7223 Query 165864 TTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATG 165923 |||||||| |||||||| ||| | ||||| || || || ||| | |||||||| ||| Sbjct 7222 TTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATG 7163 Query 165924 CTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTC 165983 || || || || || | || ||||||| ||| | ||||| | ||||| | || | Sbjct 7162 CTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTA 7103 Query 165984 AATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTT 166043 || || | || ||||||||||| |||||||| || ||||||| || ||||| |||||| Sbjct 7102 AACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTT 7043 Query 166044 GAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCT 166103 ||||| |||||||| ||||| ||| | | |||||||| | ||||| ||| ||||| || Sbjct 7042 GAAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCT 6983 Query 166104 GTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCA 166163 ||||||||| || || || || |||||||||||||| || || | || ||||| Sbjct 6982 CAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCT 6923 Query 166164 CTTTAA 166169 |||||| Sbjct 6922 CTTTAA 6917 >seq1186 Length=9024 Score = 365 bits (404), Expect = 5e-96 Identities = 365/471 (77%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 164450 AACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTG 164509 || ||| | |||||||| ||||| ||| | || || || ||||| ||||| ||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 164510 TTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAT 164569 ||| || ||||||||||| | || |||||||| | | ||||| || || ||||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 164570 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCC 164629 || || ||| |||||||||||| ||||| ||||||||||| ||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 164630 GCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 164689 || |||||||||||||||||| | || |||||||||||||| ||||||||||| ||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 164690 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTT 164749 | ||||||||| | || || ||||| ||||| |||| |||||||| ||| | || || Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT-TT 5609 Query 164750 AGCACC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCA 164808 | || | ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5608 ATCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCA 5549 Query 164809 GGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGT 164868 |||||||| | ||||| ||||| ||| | ||||||||||| | || ||||| || Sbjct 5548 AGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGT 5489 Query 164869 GATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||||| || ||||| ||||||||||||||||| ||| | ||| ||| ||| Sbjct 5488 AATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 5438 Score = 289 bits (320), Expect = 3e-73 Identities = 288/368 (78%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| | ||| | ||||| || || || ||||| || ||||||||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 163988 ATGATTCCCTGC-CTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | || | |||| ||| | ||| ||||||||||| ||||||| ||||| Sbjct 8762 ATGAT-CCCTACTCTTTTAACAGCTACTTC-TGTATTCATCATCGCATTCATCGCTGCTC 8705 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 ||||||| ||||||||||| ||||| || || || ||||||| | | || || |||| Sbjct 8704 CTCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACA 8645 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 |||||||| ||||||||||||||||| | |||||||| |||||| | ||||||||||| | Sbjct 8644 ACATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAA 8585 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | ||||||||||| ||| ||||| ||| | |||||||||||||||| |||| | | | Sbjct 8584 TTTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 8525 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | ||||||| | | || |||| ||||||||| |||||||||||| | |||| || Sbjct 8524 TTTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCC 8465 Query 164286 GTCTTGGT 164293 || | ||| Sbjct 8464 GTTTAGGT 8457 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 164294 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 164353 |||||||| ||||| || || ||||||||||| || ||||| || | ||| || ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 164354 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCT 164398 | |||| ||| |||||||||||||||||||||| | |||||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCT 8065 >seq681 Length=27805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 164460 TGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAA 164519 ||| | | ||||| ||| | || || || ||||| || || ||||| | ||| |||| Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 164520 TGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGA 164579 |||||||||| | || |||||||| | | ||||| || || || || || || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 164580 ACTATGGTTACAAGTTTGGTC---AGGAA-GAAGAAACCTACAACATCGTTGC 164628 || |||||||||||| |||| ||||| | |||||| ||||||||||| || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557636743267560