Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1134 567 8e-157 seq1186 369 4e-97 seq681 122 1e-22 seq893 87.8 2e-12 >seq1134 Length=9887 Score = 567 bits (628), Expect = 8e-157 Identities = 746/1028 (73%), Gaps = 12/1028 (1%) Strand=Plus/Minus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAG-CGTGATCGGTTCGTTTTTGTTGGTTGGT 178893 ||||| |||| || | ||||||||| ||| | | || || ||||| || || ||||||| Sbjct 7936 TGGTTCGATG-ACGCAGATGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGT 7879 Query 178894 CAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAA 178953 ||||| | | | ||||| ||||||| | ||| | || |||||| | || || |||| Sbjct 7878 CAGGTTTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACAA 7819 Query 178954 CATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATT 179013 |||| || || || ||||| || || || | || |||| || | || || ||||| | Sbjct 7818 CATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAACT 7759 Query 179014 TCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTAT 179073 || | || || ||||| |||||||||||| || | | || || || || ||| || ||| Sbjct 7758 TCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGTAT 7699 Query 179074 GGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTT 179133 ||||||| ||||| || || ||||| || ||| ||||||| || || ||||||||| Sbjct 7698 GGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCCTT 7639 Query 179134 TTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCG 179193 | || || | |||||||| || | | | || ||||||||| | || || |||||||| | Sbjct 7638 TCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAATTG 7579 Query 179194 CACGTCTAGTCGGTA----TTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCT 179249 | ||| || ||| | ||||||||||| |||||||| || || | |||||| || Sbjct 7578 CGCGT----TCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCT 7523 Query 179250 GTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCG 179309 || || || ||||| || | || || ||| | || || || |||||||| || || Sbjct 7522 GTATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCA 7463 Query 179310 TCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGG 179369 ||||| |||||||| || ||||| || | || ||| | ||||| |||||||||||| Sbjct 7462 AGTTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGG 7403 Query 179370 ACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGT 179429 || || ||||| ||||||||||||||||| || ||| | | || | || || | ||| Sbjct 7402 ACTCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGT 7343 Query 179430 GCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACA 179489 || ||||| ||||| || ||||| |||||| | || ||||| |||| | || || Sbjct 7342 GCAATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACT 7283 Query 179490 TTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGT 179549 ||| || ||| | || ||||||| || || || || || ||||| ||||| ||| | Sbjct 7282 TTCCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGA 7223 Query 179550 TTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATG 179609 |||||||| ||||| || ||| | || || || || || ||| |||| ||||| ||| Sbjct 7222 TTCTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATG 7163 Query 179610 TTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTT 179669 | || || || || | |||||||||| | ||||| | ||||| | || | Sbjct 7162 CTATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTA 7103 Query 179670 AACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTC 179729 ||||| ||||| ||||| |||||||| || || ||| |||| || || ||||||||||| Sbjct 7102 AACCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTT 7043 Query 179730 GAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCA 179789 || || |||||||| || || ||| |||| ||||||||| | ||||| |||||||| | Sbjct 7042 GAAACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCT 6983 Query 179790 GTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCT 179849 || |||||||| ||| || ||||| |||||||||||||| || | || |||||| Sbjct 6982 CAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCT 6923 Query 179850 CTGTGATA 179857 || | ||| Sbjct 6922 CTTTAATA 6915 >seq1186 Length=9024 Score = 369 bits (408), Expect = 4e-97 Identities = 369/474 (78%), Gaps = 6/474 (1%) Strand=Plus/Minus Query 178120 AACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTG 178179 || ||| | |||||||| ||||||||||| || || |||||||| ||||||||||| | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 178180 TTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAAC 178239 ||| || ||||||||||| | || ||||| || | | |||||||| || || ||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 178240 GAAAGTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTG 178297 ||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||| | Sbjct 5787 GAA--TCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAG 5730 Query 178298 CTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTT 178357 |||| || |||||||| ||||| | |||||||||||||| || ||||||||||| |||| Sbjct 5729 CTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 5670 Query 178358 CGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTG 178417 | | ||||||||| | || || ||||| ||||| |||| ||||| || ||| | ||| Sbjct 5669 CATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGT- 5611 Query 178418 TTAGCACC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGT 178476 ||| || | ||||| |||||| | ||||| ||||||||||||||||| | | || | Sbjct 5610 TTATCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCT 5551 Query 178477 CAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAA 178536 || || || | ||||| ||||| ||| | ||||||||||| | |||||||| Sbjct 5550 CAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAG 5491 Query 178537 GTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 || ||||| || ||||| ||||||||||||||||| ||| | ||| ||| |||| Sbjct 5490 GTAATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAA 5437 Score = 271 bits (300), Expect = 9e-68 Identities = 282/367 (77%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| | ||| | || || || | || ||| | || |||||||||||||||| | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | | ||| || ||||| |||||| |||| ||| |||||||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACT-TCTGTATTCATCATCGCATTCATCGCTGCTCC 8704 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 |||||| |||||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 8703 TCCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAA 8644 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| ||||||||||| | ||| | |||||||| || ||| | |||||||| || || Sbjct 8643 CATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAAT 8584 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||||||||||| || |||||| | ||||| |||||||||| |||| | | | Sbjct 8583 TTGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 8524 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | ||||||| | | ||||||| |||||||| |||||||||||| | |||| ||| Sbjct 8523 TTGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCG 8464 Query 177957 CCTAGGT 177963 ||||| Sbjct 8463 TTTAGGT 8457 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 177964 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTC 178023 |||||||| |||||| ||| || |||||||||||||| || || ||| ||||||||||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 178024 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 | | || ||| |||||||||||||||||||||||| |||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 122 bits (134), Expect = 1e-22 Identities = 135/178 (76%), Gaps = 8/178 (4%) Strand=Plus/Minus Query 178127 TGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTG 178186 || ||| | | ||||||||||| || || |||||||| || |||||||| | ||| || Sbjct 3264 TGCTGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTG 3205 Query 178187 CGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTC 178246 | |||||||||| | || ||||| || | | |||||||| || || |||||| || Sbjct 3204 CATTGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAA--TC 3147 Query 178247 AG--AACTATGGTTACAAGTTCGGTCAAGAAGA----AGAGACCTACAACATCGTTGC 178298 || ||| ||||||||||||||||||||| || ||| || ||||||||||| || Sbjct 3146 AGCTAACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 >seq893 Length=16748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 18368 AGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGG 18427 ||||| | || ||||||||||||||| |||||| |||||||||||||||| ||||||| Sbjct 2729 AGGGTCGATGCCCGAGTGGTTAATGGGGGCGGATTGTAAATCCGCTGGCTACGCCTACGT 2670 Query 18428 GGGTTCAAATCCCTCCCTGCCCA 18450 ||||| ||||| | | ||||| Sbjct 2669 TGGTTCGAATCCGACTCGGCCCA 2647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596288319423280