Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1134 562 4e-155 seq1186 367 2e-96 seq681 91.5 2e-13 >seq1134 Length=9887 Score = 562 bits (622), Expect = 4e-155 Identities = 742/1025 (72%), Gaps = 8/1025 (1%) Strand=Plus/Minus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGG 170648 |||||||||| | ||||||||| | |||| || || || ||||| || || ||| Sbjct 7936 TGGTTCGATGACGCAGATGACTGGTT---ACGTCAAGACCGTTTCGTATTCGTAGGTTGG 7880 Query 170649 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCAC 170707 || || || || || |||||| |||||| ||||| | || || ||| | || || || Sbjct 7879 TCAGGT-TTATTATTATTCCCATGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTAC 7821 Query 170708 GACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAA 170767 ||||||||||| |||||||| || || | |||| ||| ||| | |||||| ||| Sbjct 7820 AACATTTGTTACTTCATGGTACACACATGGTTTAGCAACTTCTTACTTAGAAGGTTGTAA 7761 Query 170768 TTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 170827 ||| | ||||| ||||| ||||| |||||| | |||||| || || |||||| | | Sbjct 7760 CTTCTTAACAGCAGCTGTTTCAACTCCTGCTAACAGTATGGGCCACTCACTTCTTTTTGT 7701 Query 170828 TTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAA 170887 ||||||||||| | || || ||||| ||| ||||| ||||| || || | ||| Sbjct 7700 ATGGGGTCCTGAAGCGCAAGGTGATTTAACACGTTGGTTCCAACTAGGTGGTTTATGGCC 7641 Query 170888 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAAT 170947 ||| || || | ||||| || |||| | | || ||||||||| | || || |||||||| Sbjct 7640 TTTCGTAGCTTTACACGGTGCGTTTGGTTTAATCGGTTTCATGTTACGTCAATTTGAAAT 7581 Query 170948 CAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGT 171007 ||| ||| | | || ||||| |||||||||||||| | || || |||| Sbjct 7580 TGCGCGTTCTGTAAACTTACGTCCTTACAACGCAATCGCTTTCTCAGCACCAATTTCTGT 7521 Query 171008 GTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTC 171067 || || || ||| | || || ||| | || || ||| |||||||||||||||| Sbjct 7520 ATTCGTATCTGTATTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTCGCACCAAG 7461 Query 171068 CTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGAC 171127 ||||| ||||||||||||||||| || | || ||| | || ||||||||||||||||| Sbjct 7460 TTTTGGTGTTGCAGCAATCTTCCGTTTTATTCTATTCTTCCAGGGTTTCCACAACTGGAC 7401 Query 171128 ACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGC 171187 || || ||||| || |||||||||||||| ||| | | || | ||| || | | ||| Sbjct 7400 TCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 7341 Query 171188 AATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTT 171247 |||||| |||| || ||||| || || || | |||||||||||| || ||||| || Sbjct 7340 AATTCACGGTGCAACTGTAGAAAACACATTATTCGAAGATGGTGATGGTGCTAACACTTT 7281 Query 171248 TAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTT 171307 || || || | || || | ||||| || || || ||||| |||||||| | || Sbjct 7280 CCGTGCTTTCAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACTGCTAACAGATT 7221 Query 171308 CTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCT 171367 |||||| |||||||| ||| | || || || || || ||||| || ||||| ||||| Sbjct 7220 CTGGTCACAGATTTTCGGTGTAGCTTTTGCTAACAAACGCTGGTTACACTTCTTCATGCT 7161 Query 171368 GTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAA 171427 || || || || | ||||||||| | ||| | ||| | ||||| | ||| | || Sbjct 7160 ATTCGTACCAGTTACTGGTCTTTGGATGAGTGCAATTGGGGTGATTGGCTTAGCTTTAAA 7101 Query 171428 TCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGA 171487 || || || |||||||| || |||||| || |||| || |||||||| ||||| || Sbjct 7100 CCTAAGAGCCTATGATTTTGTTTCTCAGGAAATCCGAGCTGCCGAAGATCCTGAGTTTGA 7041 Query 171488 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGT 171547 || |||||||| || || ||| |||| ||||||||| ||||||| |||||||| | Sbjct 7040 AACATTCTATACAAAAAATATCTTATTAAATGAAGGTATTCGTGCGTGGATGGCTGCTCA 6981 Query 171548 AGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACT 171607 |||||||||||| ||| || || ||||| || ||||| |||||||||| || || || Sbjct 6980 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 6921 Query 171608 TTGAT 171612 || || Sbjct 6920 TTAAT 6916 >seq1186 Length=9024 Score = 367 bits (406), Expect = 2e-96 Identities = 371/483 (77%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 169874 AACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTG 169933 || ||| | |||||||| ||||||||| | |||||||| || || |||||||| || | Sbjct 5907 AATATCTTAATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTA 5848 Query 169934 TTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAAC 169993 || || ||||||||| | || ||||| | | |||||||||| || || ||| Sbjct 5847 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGAAAAC 5788 Query 169994 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCC 170053 || || ||| ||||||||||||||||||||||||||| || ||||||||||| || Sbjct 5787 GAATCAGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCT 5728 Query 170054 GCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCA 170113 || ||||||||||| ||||| | ||||||||||||||||| ||||||||||| |||||| Sbjct 5727 GCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCA 5668 Query 170114 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTC 170173 | ||||||||| | || || ||||| ||||| | || ||||| || ||| | ||| | Sbjct 5667 TTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATTTGGTTTACAGCTTTAGGTTTA 5608 Query 170174 TCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 170233 || || ||||| |||||| | ||||| ||||||||||||||||| | | || ||| Sbjct 5607 TCAACTATGGCTTTCAACTTAAACGGGTTCAACTTCAACCAGTCAGTTGTAGACTCTCAA 5548 Query 170234 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 170293 |||||||| | ||||| ||||| ||| | ||||||||||| | || ||||| || Sbjct 5547 GGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAGGTA 5488 Query 170294 ATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGAGTCCACTCCT 170353 ||||| || ||||| ||||||||||||||||| ||| | ||| ||| ||| | || || Sbjct 5487 ATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCT 5428 Query 170354 GTG 170356 ||| Sbjct 5427 GTG 5425 Score = 264 bits (292), Expect = 1e-65 Identities = 278/366 (76%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| | ||| | || || ||||| |||||| | || ||||||||||||| || | Sbjct 8822 TTCTGCGAGTGGATCACTTCTACTGAGAACCGTTTATACATCGGTTGGTTCGGTGTTATC 8763 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || | |||| || || ||||||||||| ||||||| |||||| Sbjct 8762 ATGATCCCTACTCTTTTAACAGCTACTTCTGTATTCATCATCGCATTCATCGCTGCTCCT 8703 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 ||||| |||||||| || ||||| || || ||| ||||||| | | || ||||||||| Sbjct 8702 CCTGTTGACATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGTAACAAC 8643 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 |||||| ||||||||||| | || | || ||||| |||||| | |||||||| || || Sbjct 8642 ATCATCACTGGTGCTGTTATCCCTACATCTAACGCGATCGGTTTACACTTCTACCCAATT 8583 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 ||||||||||| ||| || || ||||| |||||||||||||||| |||| | | || Sbjct 8582 TGGGAAGCAGCTTCTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 8523 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | ||||||| || | || |||| ||||||||| |||||||||||||| || | ||| Sbjct 8522 TGCCACTTCTTCTTAGGTATCTGCTGTTACATGGGCCGTGAGTGGGAATTATCTTTCCGT 8463 Query 169712 CTGGGT 169717 | ||| Sbjct 8462 TTAGGT 8457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 169718 ATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTC 169777 ||||| || |||||| |||||||||||||||||| || || || || | ||||| ||| Sbjct 8169 ATGCGTCCATGGATCGCTGTTGCTTACTCTGCTCCAGTAGCTGCTGCAACTGCTGTATTC 8110 Query 169778 CTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829 | ||||||| | || ||||| || |||||||||| ||||||| | |||| Sbjct 8109 ATCATCTACCCTATCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 8058 >seq681 Length=27805 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 169884 TGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGA 169943 ||| | | ||||||||| | |||||||| || || || ||||| || | || || Sbjct 3261 TGCTCACGTTCCACATGTTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCTCTGCAT 3202 Query 169944 TGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGA 170003 |||||||| | || ||||| | | |||||||||| || || ||||| || | Sbjct 3201 TGCACGGTTCATTAGTAACTTCTTCTTTAATCCGTGAAACAACTGATAACGAATCAGCTA 3142 Query 170004 ACTATGGTTACAAGTTCGGTCAAGAAGA----AGAGACCTACAACATCGTTGC 170052 || ||||||||||||||||||||| || ||| || ||||||||||| || Sbjct 3141 ACGCTGGTTACAAGTTCGGTCAAGAGGAACGTAGAAACTTACAACATCGTAGC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592179649518160