Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq27 140 7e-28 seq2016 105 1e-17 seq533 104 5e-17 seq2326 102 2e-16 seq503 102 2e-16 seq493 100 6e-16 seq449 89.7 1e-12 >seq27 Length=268247 Score = 140 bits (154), Expect = 7e-28 Identities = 763/1207 (63%), Gaps = 30/1207 (2%) Strand=Plus/Plus Query 315650 TGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGA 315709 |||| | |||| ||||| || || ||||| ||| | |||||| |||| || || | Sbjct 219674 TGTGTGTGATCATGACCACGCCGCCGCCGAACGCCTTGATCGCCTCGGCCAGCGCGCCCA 219733 Query 315710 GACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGG-TTGTTGC 315768 | |||||||||| ||||||| ||||| || || || | || |||||| ||||| | Sbjct 219734 GGGAGTCGCGGTCCAGGTAGTTGGTGGGCTCGTCGAGCACCAGGATGTGGGGGTTGTT-C 219792 Query 315769 CATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGA 315828 || | || ||||| | || | ||| | || || || || ||||| || || ||| | Sbjct 219793 CACATGGCCGCGCCCAGCACCACCTTGACCTTCTGGCCGCCCGACAGGCCGCGCATGAGC 219852 Query 315829 GAATGAGTGGTAAATTCTGGGTCAAGGCCAACATTAGCCAT--ATGTTCTTCC--ACGTT 315884 || || |||| || || | || ||||||| || | | | || |||| ||||| Sbjct 219853 GAGTGGGTGGAGAACTCGGACTCGAGGCCAA----AGTCCTCGAGGTGCTTCTGGACGTT 219908 Query 315885 CTTCGCGGTCAGTGGTTTAAACATACCGTTTGCAACGGCT---TCTTTGGTGTCAATGTC 315941 || |||||| || || ||| | || ||| || |||| || | || Sbjct 219909 GAGCGAGGTCAGGGGCTTGGCCATGAGGCCGGCCTGGGCCGCCTCCTTGGCATCCACCTC 219968 Query 315942 GTTCAGGATCTTACCAAA-CCCATACTCCTCGAGACGTTCGCGGGACATCCACTGGGTAG 316000 || ||||| |||| ||||| || | | || || |||| ||||||| | | Sbjct 219969 CACCACCATCTTCTCAAAGCCCAT-CTGCACCAGGTCGTCACGGGGCATCCACACGTTCT 220027 Query 316001 TCTCGTCGTTTTT------CCACTGAACTTCATACTCATACGACTTCTTGAGTTTGCGTC 316054 | ||| | |||||| || || ||||| || |||||| ||||| | Sbjct 220028 TGTCGGGGCCGCAGCCCACCCACTGCACCTCGTACTCGTAGCTGGACTTGAGCTTGCGAC 220087 Query 316055 GCCCAAGGATCTTGTCAAGGATTTTCTTCACACCGTCAACAACTTTCGTTTCATACATCT 316114 | || ||||| || | || |||| ||||||| || || | ||||| Sbjct 220088 GGCCCAGGATGCGCTCCACGACGCGCTTCTGGCCGTCAATCACGATCTGCTGCGCCATCT 220147 Query 316115 TCTTCAGTTCTTCGTCATTTGTCTTCCTAGAAACGACGTCAAGTGATTCTTTGTCTTCAC 316174 |||| || || ||| | ||| | ||| || || | || ||| |||| Sbjct 220148 TCTTGGCCTCCTCCTCAGTGATCTGGCGGTCAACCTTGTTCAGCGCCTCACGGTCCTCAC 220207 Query 316175 CGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGT 316234 | || || ||||| ||||||||||| || | ||| | || || || | |||||||| Sbjct 220208 CAATCGCGTAGCGCCACTGGATGTACTGGTTCGCGGTCTTCTCCAGGTGCTGCTCGATGT 220267 Query 316235 GGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTAC 316294 ||||||| |||||||| |||||||| || | ||||| || || |||||||| ||| | | Sbjct 220268 GGTGGAACGCGTGCTGCGCCACGTACGCGATACGCAGGTTGGGGTGCTTCCACACGGTGC 220327 Query 316295 CGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCCCGCGCCGT 316354 | | | ||||||| || || |||| || || | || || || ||||||| Sbjct 220328 CCTCGCAGGGCTCCATCTCGCCGGTCAGCAGCTTGATCATGGTCGACTTGCCGGCGCCGT 220387 Query 316355 TTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCATTCACGTTGTCGAAGA 316414 | | |||| || | | | |||| || | | | | ||||| | || Sbjct 220388 TGGCGCCCAGCACCGCCACACGGGAGGACAGGGTGATGTAGATGGACACGTCG--GACAG 220445 Query 316415 CCAGT--TTGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTCATGATGGCACG 316472 | || || || | | || |||||||| || ||| | ||| | |||||| Sbjct 220446 CGTGTTCTTCTCGGCCTTGGGGTACTTGAAGCCGACCTTCATCATCTTGAGGATGGCCTT 220505 Query 316473 GTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCTTCGT 316532 |||||| | ||| |||||| || |||||||| || ||||| || | | | | Sbjct 220506 GTCCTTGGTCTTGACACCCTCCAGGAAGCCGGGCTCAGGGAACTTGAAGGAGATGGGGGA 220565 Query 316533 CTCGGCGAGCGTGTAGTAACTTGCAGATTCGGGACGCTTCTTCACGAATTCGGACAGATT 316592 | | ||| |||||| | ||||| || ||||||||| |||||||| || Sbjct 220566 GGCCGACAGCTCGTAGTAGGAGCGCGCCTCGGGCTTCTGCTTCACGAACTCGGACAGGTT 220625 Query 316593 TCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTAATGGATGATAGAAGTACAGACAGC 316652 || || |||| ||||| |||| ||||| || | ||| || ||| ||| Sbjct 220626 GCCGCGGTAGATCTTGAGCTTGCGGTT---CTCGTAGTGCAGGATGTTGGTGCAG-CAGA 220681 Query 316653 A-TCGAGGAAACCAGAATCGTGTGATACAATCACACATGAAACGCCTTTTAGGTTGACCA 316711 | ||||| || ||||| ||||| || || || || | | ||| | ||| ||||| Sbjct 220682 AGTCGAGAAAGCCAGAGTCGTGGGACACCATGACTGAGGTCACGTGGGTCAGGCCGACCA 220741 Query 316712 GATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTA 316771 | |||| |||||| ||| || || ||||||||||| || || || || | Sbjct 220742 GGTAGTTCTGCAGCCACGCCACGTTGTGGACGTCCAGATGGTTGGTGGGCTCATCCAGCA 220801 Query 316772 GTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCC 316831 | || | | || | | |||||| || || || || || |||||||| ||||| || | Sbjct 220802 GCAGGATGTCGGCCTTCTGCAGCATGGCACGCGCCAGCGCCAGCTTCATCTTCCAGCCGC 220861 Query 316832 CGGAAAG 316838 ||||||| Sbjct 220862 CGGAAAG 220868 >seq2016 Length=2168 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 1439 ACCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1498 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| || || |||||| || Sbjct 1499 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1558 Query 282992 AATACC 282997 |||||| Sbjct 1559 AATACC 1564 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 1821 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1880 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 1881 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 1940 Query 282993 ATACC 282997 ||||| Sbjct 1941 ATACC 1945 >seq533 Length=40786 Score = 104 bits (114), Expect = 5e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| |||||| ||||| || | |||| || || ||||||||||||||||| Sbjct 40097 ACCACCGCGCAAGCGAAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 40156 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 40157 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 40211 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 40475 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 40534 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 40535 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 40588 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||||| ||| || || | ||||| ||||| || | ||||| | Sbjct 40369 ACCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATCGTGTCAGATGACTCGACCT 40427 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 40428 CCAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACGAAGATCTGCAT 40473 >seq2326 Length=1360 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || ||||||||||||||||| Sbjct 1015 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1074 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 1075 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 1128 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 646 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 705 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 706 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 759 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||||| ||| || || | ||||| ||||| || | ||||| | Sbjct 540 ACCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATCGTGTCAGATGACTCGACCT 598 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 599 CCAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACGAAGATCTGCAT 644 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||||| ||| || || | ||||| ||||| || | ||||| | Sbjct 909 ACCCTCCTTGTCCTGGATCTTCTGC-TTCACATTCTCGATCGTGTCAGATGACTCGACCT 967 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 968 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1013 >seq503 Length=44646 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || ||||||||||||||||| Sbjct 44635 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 44576 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || || |||||||||| || || |||||| Sbjct 44575 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCA 44522 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| || ||||| ||||| ||| | ||||||||||| || | || || | Sbjct 44313 ACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATAGTGTCGGAGGACTCCACCT 44255 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | || ||||||||||| ||||| | ||||| ||||| ||||| Sbjct 44254 CCAGGGTGATCGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 44212 >seq493 Length=45929 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || |||||||||||||| || Sbjct 45699 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 45640 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 45639 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 45580 Query 282993 ATACC 282997 || || Sbjct 45579 ATGCC 45575 Score = 95.1 bits (104), Expect = 3e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||||||||||| |||||||| ||| || ||| | ||||| ||||| |||| ||||| | Sbjct 45805 ACCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTCTCGATGGTGTCTGAAGACTCGACCT 45747 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 45746 CAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 45701 >seq449 Length=50303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||| | ||||| | || || ||| ||||||||||| ||||||| || ||||||||| Sbjct 36796 GTGTAGATGTAACGGGGGCTGGCAGCATCCTTGCCACCCTGCAGCCGCGTGCCAAACTGA 36737 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || ||||| ||| ||| ||||||||| || || | ||||| |||| || | | Sbjct 36736 CCTGAGGGCACCAGCAGGTTGATGTTGTTGGAGCCCACAAAGTCCTGTGCCAGGTTGATG 36677 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 || || | ||||| ||||||||||||| || || ||| |||| | |||||| Sbjct 36676 ATGGTGGCGGACAGGGACGCCTCGCCGTGGTGGTACGCCGAGTGCTCGGACACATAACC 36618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046705229060582