Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2016 100 2e-16 seq2326 98.7 7e-16 seq533 98.7 7e-16 seq493 98.7 7e-16 seq503 96.9 2e-15 seq67 86.0 5e-12 >seq2016 Length=2168 Score = 100 bits (110), Expect = 2e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 1817 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 1876 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 1877 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 1936 Query 44227 AGGCACACCT 44236 || | |||| Sbjct 1937 GGGAATACCT 1946 Score = 98.7 bits (108), Expect = 7e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| |||||| ||||||||||| ||||| || ||| |||| || Sbjct 1457 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTC 1516 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 ||||||||| ||||| ||||||| |||||||| || | || | |||| Sbjct 1517 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATACCT 1565 >seq2326 Length=1360 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 642 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 701 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 702 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 758 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 1011 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 1070 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 1071 AGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 1127 >seq533 Length=40786 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 40471 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 40530 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 40531 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40587 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| |||||| ||||||||||| || || || ||| |||| || Sbjct 40115 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTC 40174 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 40175 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 40210 >seq493 Length=45929 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 45703 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 45644 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 45643 GGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 45587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 44232 CACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACC 44290 |||| || || ||| |||||||||||| | |||| | || || |||| ||| |||||| Sbjct 45380 CACCCTCTTTGTCCTGAATCTTCTGCTTC-ACGTTCTCAATCGTATCGGAGGACTCCACC 45322 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 |||| || |||||||| ||||| |||||||| |||||||| || Sbjct 45321 TCCAGGGTGATCGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 45278 >seq503 Length=44646 Score = 96.9 bits (106), Expect = 2e-15 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 || |||| ||||| ||| |||||||||||| | |||| | || ||||||| ||| ||| Sbjct 44317 GCTCACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATAGTGTCGGAGGACTCC 44259 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 ||||||| || |||||||| ||||| |||||||| |||||||| || Sbjct 44258 ACCTCCAGGGTGATCGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 44212 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| |||||| |||||| ||||||||||| || Sbjct 44639 CATGCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 44580 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| || |||||||||| |||||||| || Sbjct 44579 AGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 44523 >seq67 Length=188910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||| ||||| || ||| |||||| ||||||||||| ||||| || ||| Sbjct 176521 CAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCG 176580 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||||||||||| || |||||||| | |||||||| || Sbjct 176581 GCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTC 176625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979286758861