Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq503 93.3 1e-13 seq2016 87.8 4e-12 seq493 87.8 4e-12 >seq503 Length=44646 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||| |||||||| ||| ||| Sbjct 44212 CAGATCTTCGTCAAGACCCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCCTCCGAC 44271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||| || || |||||||||||||| || || Sbjct 44272 ACTATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGG 44312 >seq2016 Length=2168 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || ||||||| Sbjct 1816 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCAGAC 1757 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| ||||||||||| || ||||| |||||||| || || Sbjct 1756 ACCATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGG 1716 >seq493 Length=45929 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||||||||| |||||||| ||| || Sbjct 45278 CAGATCTTCGTCAAGACCCTTACGGGCAAGACGATCACCCTGGAGGTGGAGTCCTCCGAT 45337 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || |||||||| || || ||||||||||||||||| || Sbjct 45338 ACGATTGAGAACGTGAAGCAGAAGATTCAGGACAAAGAGGG 45378 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| ||||| || |||||| Sbjct 45704 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCAGAC 45763 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||||||||| || ||||| |||||||| || || Sbjct 45764 ACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGG 45804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203692134032402