Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20applanata_20[genbank_20GCA_5F001662365.1_202016-04- 26] 2,533 sequences; 78,504,178 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2016 131 2e-25 seq493 131 2e-25 seq2326 127 2e-24 seq533 127 2e-24 seq503 113 4e-20 seq67 91.5 1e-13 seq471 89.7 5e-13 >seq2016 Length=2168 Score = 131 bits (144), Expect = 2e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 1820 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 1879 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 1880 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1939 Query 41755 AA 41756 || Sbjct 1940 AA 1941 Score = 129 bits (142), Expect = 5e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 1440 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1499 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 1500 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 1559 Query 41756 A 41756 | Sbjct 1560 A 1560 >seq493 Length=45929 Score = 131 bits (144), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 45700 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 45641 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 45640 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 45581 Query 41755 AACGC 41759 || || Sbjct 45580 AATGC 45576 >seq2326 Length=1360 Score = 127 bits (140), Expect = 2e-24 Identities = 100/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 645 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 704 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 705 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 764 Score = 122 bits (134), Expect = 8e-23 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| | Sbjct 1014 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 1073 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 1074 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 1133 >seq533 Length=40786 Score = 127 bits (140), Expect = 2e-24 Identities = 100/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 40474 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 40533 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 40534 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 40593 Score = 116 bits (128), Expect = 3e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| | || | |||||| ||||||||| ||||||||| ||||| ||||| | Sbjct 40098 CCACCGCGCAAGCGAAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 40157 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 40158 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 40216 >seq503 Length=44646 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| | Sbjct 44636 GCCACCGCGCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 44577 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||| || || ||||||||||| ||||| | ||| Sbjct 44576 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 44517 >seq67 Length=188910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || || || | ||| || ||||| ||| ||||||||| ||||| ||||||| |||||| Sbjct 176519 CGCAGGCGCAGCACGAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 176578 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGA 41755 || |||| || ||||||||||| || || || || ||||| ||||| |||||| Sbjct 176579 CGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGCGGGA 176633 >seq471 Length=47721 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| | |||||||| |||| || ||||||||||||||||| | Sbjct 3041 CCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 3100 Query 41733 TCAGGCGCTGTTGGTCCGCGGG 41754 |||||||||| ||||| | ||| Sbjct 3101 TCAGGCGCTGCTGGTCAGGGGG 3122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462289362299600