Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 seq1645 98.7 2e-15 seq3164 95.1 3e-14 seq517 95.1 3e-14 seq31 95.1 3e-14 seq112 89.7 1e-12 >seq5 Length=471533 Score = 154 bits (170), Expect = 3e-32 Identities = 161/209 (77%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 211264 CGGTGA-TCAAGTCACCGTTACGGGAGATCTGGGTGCTC---ACTTTGTTGCCAAATCCA 211319 |||||| ||| ||| ||||| || ||||| ||||| | || || |||||||| | Sbjct 216974 CGGTGAATCAGGTCGCCGTTTCGAGAGAT---GGTGCACGTTACCTTCTTGCCAAAATCC 216918 Query 211320 ACCGAGCCATTGATCGTTTGTTGGATTGATTCAATGGCGAAGTTGGTGTAACGGCGGTAA 211379 |||||||||||| ||| || | ||| || || |||| ||||||||| | |||||||| Sbjct 216917 GCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTAG 216858 Query 211380 ACCGTCTTGAAGAAGGTAATCTGGGGGTTGCCGGTCAGGTAAACGTCCTGGGCACCGTAC 211439 ||| |||||| ||||| ||||| |||||||||| |||||||| |||||| || || || Sbjct 216857 ACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATAG 216798 Query 211440 GCGACGAGCTGTGAAAGTCCTCCGGCCAT 211468 ||||| ||||| ||| || ||| |||| Sbjct 216797 GCGACCAGCTGCATAAGGCCACCGCCCAT 216769 >seq1645 Length=14626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 5552 TGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTCGAG 5611 Query 165769 CCCC 165772 |||| Sbjct 5612 CCCC 5615 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||| Sbjct 159 GCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAGC 218 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 219 CCCTCATTGGGC 230 >seq3164 Length=2050 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||| Sbjct 160 GCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAGC 219 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 220 CCCTCATTGGGC 231 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1892 GCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAGC 1833 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 1832 CCCTCATTGGGC 1821 >seq517 Length=84366 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||| Sbjct 84202 GCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAGC 84143 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 84142 CCCTCATTGGGC 84131 >seq31 Length=337675 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||| ||| Sbjct 5964 CTTGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGATCG 5905 Query 165767 AGCCCCACGATGGGC 165781 |||||| | ||||| Sbjct 5904 AGCCCCTCATTGGGC 5890 >seq112 Length=209331 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 319858 GGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCG 319917 ||||| || || | ||||||||| | || ||||||||||| || || || || | ||| Sbjct 130119 GGGAAGCCGTCGACCTGGCCGTTGGCGATGGCGCGCATCAGCGTGGACTTGCCGACGCCG 130060 Query 319918 TTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGA 319977 || || || ||||| ||||||||| ||||| |||||| | | | |||||| || Sbjct 130059 TTGGGGCCGCACAGGCCGTAGCGGCGGCCGCGCTTCAGGCGCAGCGTGGCGTTGTTGAGC 130000 Query 319978 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCG 320031 || || || | || || || || || || || || | ||||| || |||||| Sbjct 129999 AGGATCTTGGCGCCGTACGCGAGCGAGAACTCGCAGTTGCACAGCTCGTCACCG 129946 Score = 89.7 bits (98), Expect = 1e-12 Identities = 247/373 (66%), Gaps = 17/373 (5%) Strand=Plus/Minus Query 319302 GTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC--CACGTGGTCTTC 319359 |||||| | ||| ||||| ||| | ||||||||||| | ||| ||| ||| | Sbjct 130990 GTCCTTGGTCTTGACGCCCTCCAGGTATCCGGGCTCGGGCAGCTTGAACACCAGGTTGGC 130931 Query 319360 GTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTT---CTTCACGAACTCGG 319414 || ||| || ||||||| ||| | | ||||| ||| ||| || |||||| Sbjct 130930 GTT--GGTGAGCTCGTAGTACGACTTG--GCCTCGGG---CTTGGCCTTGACAAACTCGC 130878 Query 319415 ACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGC 319474 || || ||||||||| |||||| |||| | || | || || || || Sbjct 130877 TGAGGTTGCCCTTGTACACGCGCAGCTTGCGGTTGCAGTAGTCA---ATGATGTGGGAGC 130821 Query 319475 AAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGT 319534 | || ||| ||||| ||||||||||| ||||| || | | || ||| || | || Sbjct 130820 ACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACGATGATGGCGGACACGCCCGTCTGGC 130761 Query 319535 TGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGT 319594 ||| |||||| || || |||| | ||||| || | |||||||| ||||||| Sbjct 130760 TGACCAGGTAGTCCTCCAGCCACTTGACGTTCTTGACGTCCAAGTGGTTGGTTGGCTCGT 130701 Query 319595 CAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCC 319654 | || ||||| | | | ||||| ||||| | || || || || || ||||| |||| Sbjct 130700 CCAGCAGCAGGATGTCGGGGTTCATCAGCATGGTGCGCGCCAGGGCCAGCTTCATCTTCC 130641 Query 319655 ACCCTCCGGAAAG 319667 | || ||||| || Sbjct 130640 AGCCGCCGGACAG 130628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057768404076260