Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1341 190 2e-43 seq879 167 2e-36 seq12 158 1e-33 seq83 102 8e-17 seq109 82.4 8e-11 >seq1341 Length=23566 Score = 190 bits (210), Expect = 2e-43 Identities = 189/244 (77%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 || ||||||| || || || ||| |||| ||||| |||||||||| |||||| Sbjct 14025 ACTCCATCGACACCATCCCCTGCATCAAGCGCAAGGCGCAGTGGGCGCTCAAGTGGATCA 13966 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 |||||| ||| | |||| ||||||||||||||| || ||||| || |||||| ||| Sbjct 13965 CCGGCAACGAGTGC---TTCGCCGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCT 13909 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| ||| ||| | |||| || ||||||||||| ||||||||||||||||| | Sbjct 13908 TCTTCAGCGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGC 13849 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| ||||||||||||||| | |||||||| |||| |||||||||||||| | Sbjct 13848 TTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGCCTGCT 13789 Query 117192 TGCT 117195 |||| Sbjct 13788 TGCT 13785 >seq879 Length=48288 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || |||||||||||||| | || || || | | Sbjct 3808 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCT 3867 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| |||||||| ||| ||||||| Sbjct 3868 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 3926 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 3927 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAA 3986 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 3987 CATTCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 4035 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || | | Sbjct 2508 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCT 2567 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| |||||||| ||| ||||||| Sbjct 2568 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 2626 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 2627 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAA 2686 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || ||||| || ||| ||||| || | || ||| Sbjct 2687 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 2735 Score = 127 bits (140), Expect = 2e-24 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| ||||||| || || ||||||| ||||||||| |||||||| || | ||| Sbjct 4546 GGCATTCCCCCGGACCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 4605 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| ||||| || | Sbjct 4606 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGT 4665 Query 40912 GGCGG 40916 ||||| Sbjct 4666 GGCGG 4670 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| || ||||||| ||| ||||| |||||||| || | ||| Sbjct 2382 GGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGC 2441 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 2442 ACGCTGGCCGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGC 2501 Query 40912 GGCGGC 40917 || ||| Sbjct 2502 GGTGGC 2507 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || || | |||||||| |||||||| || | ||| Sbjct 3682 GGCATCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 3741 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | |||||||| || ||| ||||| || | Sbjct 3742 ACCCTGGCTGACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGC 3801 Query 40912 GGCGGC 40917 || ||| Sbjct 3802 GGTGGC 3807 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || || || | |||||||| |||||||| || | ||| Sbjct 3152 GGCATCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 3211 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 3212 ACCCTGGCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGC 3271 Query 40912 GGCGG 40916 || || Sbjct 3272 GGTGG 3276 >seq12 Length=425388 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| | | Sbjct 400840 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 400781 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| |||||| | ||||| Sbjct 400780 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400722 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||||| |||||||| || | ||||| || |||||||| Sbjct 400721 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400662 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| | ||| |||| || | |||||| Sbjct 400661 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400613 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || ||||| | | Sbjct 401992 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401933 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| |||||| | ||||| Sbjct 401932 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 401874 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||||| |||||||| || | ||||| || |||||||| Sbjct 401873 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACACTGGCTGACTACAA 401814 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| | ||| |||| || | |||||| Sbjct 401813 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 401765 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || | | Sbjct 400612 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 400553 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| |||||| | ||||| Sbjct 400552 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400494 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||||| |||||||| || | ||||| || |||||||| Sbjct 400493 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400434 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| | ||| |||| || | ||||| Sbjct 400433 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400386 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| | | Sbjct 401068 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 401009 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| ||||| |||||| | ||||| Sbjct 401008 GACACCATTGACAACG-TCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCA 400950 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || ||||| |||||||| || | ||||| || |||||||| Sbjct 400949 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400890 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| | ||| |||| || | |||||| Sbjct 400889 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400841 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 401296 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401237 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || || | ||||| |||||||| ||| | ||||| Sbjct 401236 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 401178 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 401177 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAA 401118 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| | ||| |||| || | || ||| Sbjct 401117 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGTGGC 401069 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| ||| ||||| |||||||| || | ||| Sbjct 402118 GGCATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGC 402059 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||||||| | ||| |||| || | Sbjct 402058 ACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGC 401999 Query 40912 GGCGGC 40917 |||||| Sbjct 401998 GGCGGC 401993 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 401422 GGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 401363 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||| ||||| | ||| |||| || | Sbjct 401362 ACGCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGC 401303 Query 40912 GGCGGC 40917 |||||| Sbjct 401302 GGCGGC 401297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 ||| | ||||||| ||||||||| ||||| |||| || ||||| || ||||||||| Sbjct 262827 GACGATGAGCGCCGGTTCATCAAGTACGTGTTGGCGTTCTTCGCAGCTTCAGACGGCATC 262886 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGC 116848 || ||||| |||| | |||||| | || | |||||| | ||||| || Sbjct 262887 GTGCTTGAGAACCTGGCTGCACGTTTCATGAACGACATTCAGGTGCCTGAGGCACGCGCT 262946 Query 116849 TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||| || || || ||||| |||||||||||| |||||||| Sbjct 262947 TTCTACGGTTTCCAAATTGCCATCGAGAACGTGCACAGCGAAATGTA 262993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || ||||||| || ||||| |||||||| || | ||| Sbjct 402646 GGTATCCCCCCAGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 402587 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || | ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 402586 ACGTTGGCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTCGTGCTGCGCCTGCGT 402527 Query 40912 GGCGG 40916 || || Sbjct 402526 GGTGG 402522 >seq83 Length=234864 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || ||||||| || ||||| |||||||| || | ||| Sbjct 63222 GGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGC 63281 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||| ||||||||| | || ||||| || ||| ||||| || | Sbjct 63282 ACCCTGGCTGACTACAACATTCAGAAGGAGTCAACACTGCACCTGGTGCTGCGCCTGCGC 63341 Query 40912 GGCGGC 40917 || ||| Sbjct 63342 GGTGGC 63347 >seq109 Length=210383 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || || | || ||||| |||||||| || | ||| Sbjct 134482 GGCATCCCCCCGGACCAGCAGCGTCTGATTTTTGCCGGCAAGCAGCTGGAGGATGGACGC 134541 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 134542 ACCCTGGCTGACTACAACATCCAGAAGG 134569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515192782135520