Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq879 152 3e-32 seq12 149 4e-31 seq83 91.5 1e-13 >seq879 Length=48288 Score = 152 bits (168), Expect = 3e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| ||||||||||||| | Sbjct 2734 CCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2675 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| |||||||| || ||||||||||| ||| Sbjct 2674 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 2615 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | || || || Sbjct 2614 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACC 2555 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 2554 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | ||| || ||||| ||||||||||| | | Sbjct 4034 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCC 3975 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 3974 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3915 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | || || || Sbjct 3914 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACC 3855 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || || || || || ||||||||||| Sbjct 3854 TCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 105 bits (116), Expect = 4e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | ||| || ||||| ||||||||||||| | Sbjct 2506 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2447 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| | || |||| ||||||||| ||||| ||||| ||||||||||| Sbjct 2446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 2394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | ||| || ||||| ||||||||||| | | Sbjct 3276 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3217 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| | || |||| ||||||||| || ||||| || ||||||||||| Sbjct 3216 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 3164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | ||| || ||||| ||||||||||| | | Sbjct 3806 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3747 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| | || |||| ||||||||| || ||||| || ||||||||||| Sbjct 3746 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 3694 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| ||||| | |||||||||||| | || || ||||| ||||||||||| | Sbjct 4671 TCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 4612 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| | || |||| ||||||||| ||||| ||||| ||||| ||||| Sbjct 4611 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTC 4558 >seq12 Length=425388 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | ||| || ||||| ||||||||||| | | Sbjct 400842 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 400901 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || ||||| |||||||||||| ||| Sbjct 400902 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 400961 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | | || | || | ||| ||||| Sbjct 400962 ATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACC 401021 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || ||||| |||||||| Sbjct 401022 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | || || ||||| ||||||||||| | | Sbjct 401766 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 401825 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || ||||| |||||||||||| ||| Sbjct 401826 AGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 401885 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | | || | || | ||| ||||| Sbjct 401886 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 401945 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||| || || || || |||||||||||||| Sbjct 401946 TCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | || || ||||| ||||||||||| | | Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || ||||| |||||||||||| ||| Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | | || | || | ||| || || Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACC 400565 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || ||||| |||||||| Sbjct 400566 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | || || ||||| ||||||||||| | | Sbjct 400614 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400673 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || ||||| |||||||||||| ||| Sbjct 400674 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400733 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||||| | | | | || | || | ||| ||||| Sbjct 400734 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACC 400793 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || || || |||||||| Sbjct 400794 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| ||| | || || ||||| |||||||| || | | Sbjct 401070 CCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 401129 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 401130 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGA 401189 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||||| | | | | || | || | ||| ||||| Sbjct 401190 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 401249 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||| || || || || || || |||||||| Sbjct 401250 TCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | || || ||||| ||||||||||| | | Sbjct 401994 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 402053 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| | || |||| ||||||||| ||||| || || ||||||||||| Sbjct 402054 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 402106 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||| ||| | || || ||||| ||||||||||| | | Sbjct 401298 CCGCCGCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 401357 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| | || |||| ||||||||| || || || || ||||||||||| Sbjct 401358 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 401410 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||| | ||| || ||||| ||||||||||| | | Sbjct 402522 CCACCACGCAGGCGCAGCACGAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 402581 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 | | ||| | || |||| ||||||||| || || ||||| ||||||||||| Sbjct 402582 AACGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTC 402634 >seq83 Length=234864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 63346 CCACCGCGCAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGCC 63287 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| | || |||| |||||||||||| || ||||| ||||||||||| Sbjct 63286 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTC 63234 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||| ||| || ||| |||||||| || |||||||| | Sbjct 62874 CCGCCACGCAGGCGAAGCACCAAGTGCAACGTAGACTCTTTCTGGATATTGTAGTCAGCA 62815 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| || | |||||||||||| || || || ||||||||||| Sbjct 62814 AGGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATTAGGCGCTGCTGGTC 62762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323055848621120