Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq879 131 1e-25 seq12 131 1e-25 >seq879 Length=48288 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 2716 ACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCC 2657 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 2656 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 2597 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| | ||| ||||| | || || |||||| Sbjct 2596 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTG 2537 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||||||||| |||||| Sbjct 2536 CCAGTCAGGGTCTTCACAAAGATCTGCATG 2507 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||||||||||||||| ||| ||| | || ||| Sbjct 4016 ACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCC 3957 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||| ||||| || || | |||||||||||| Sbjct 3956 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 3897 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| | ||| ||||| | || || || ||| Sbjct 3896 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTTTTG 3837 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || ||||| |||||| Sbjct 3836 CCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 >seq12 Length=425388 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| ||||||||||| |||| ||| | || ||| Sbjct 401784 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCC 401843 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| |||||||| || | ||||||||||||| Sbjct 401844 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 401903 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| ||||| | || || |||||| Sbjct 401904 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTG 401963 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| |||||||| |||||| Sbjct 401964 CCAGTCAGGGTCTTGACAAAGATCTGCATG 401993 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 400404 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400463 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| |||||||| || | ||||||||||||| Sbjct 400464 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 400523 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| ||||| | ||| || |||||| Sbjct 400524 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTG 400583 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| ||||| || |||||| Sbjct 400584 CCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 400632 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400691 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| |||||||| || | ||||||||||||| Sbjct 400692 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 400751 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| ||||| | ||| || |||||| Sbjct 400752 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTG 400811 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || || || |||||| Sbjct 400812 CCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 400860 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400919 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| |||||||| || | |||||||||||| Sbjct 400920 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGG 400979 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| ||||| | ||| || |||||| Sbjct 400980 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTG 401039 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| ||||| || |||||| Sbjct 401040 CCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| |||||||| || ||| ||| | || ||| Sbjct 401088 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCCTCC 401147 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 401148 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 401207 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | | |||| ||| ||||| | || || |||||| Sbjct 401208 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTG 401267 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| || || || |||||| Sbjct 401268 CCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 402012 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 402071 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || |||||||| |||| ||||| ||||| || || Sbjct 402072 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 402112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395055448956142