Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq879 123 2e-23 seq135 123 2e-23 seq12 105 6e-18 seq2 91.5 1e-13 >seq879 Length=48288 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| |||||||| ||||| | || ||||| | || Sbjct 3807 CATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTC 3866 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| |||| || ||||||||| ||| | || || ||||| Sbjct 3867 TGACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 3926 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| || || || || || || Sbjct 3927 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAA 3986 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || || || || ||||| || | ||| | ||||| Sbjct 3987 CATTCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 4034 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| | || Sbjct 2507 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTC 2566 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| |||| || ||||||||| ||| | || || ||||| Sbjct 2567 TGACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 2626 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| || || || ||| || || Sbjct 2627 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAA 2686 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 2687 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 2719 >seq135 Length=196152 Score = 123 bits (136), Expect = 2e-23 Identities = 515/792 (65%), Gaps = 32/792 (4%) Strand=Plus/Minus Query 23015 TTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT-TTGGAC-GTGTACTCTA 23072 ||||| |||||||| || || |||||||| || | || | |||| | | | |||| Sbjct 154754 TTGACAGCGATCGACGCTAGGTTGCATACCGCATAC--GTATGTTGGTCTGAGAACTCGG 154697 Query 23073 CAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTC 23132 ||||||| ||| || ||||| |||| || ||||||| || |||||||| || | Sbjct 154696 TGATTTCGGCACACAGGTTGCTGGACTTGATTGTGCCCACGTTCGCGTGGTTGCTCTTGC 154637 Query 23133 GATTGCACGAA-TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTC--GA 23189 | ||| ||| |||||||| || ||||| |||||||| || |||| || | ||| || Sbjct 154636 GGTTG-ACGTGGTCCTTGTATAGGATGTAGGGCGTGCCAGTTTCGA--TGAGGCTCTTGA 154580 Query 23190 TGATC-GCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCG 23248 || ||| |||||| || | || ||| || ||| | || ||| | || || Sbjct 154579 GGACGTGCT-GCCACAGGGTGCGTGCCGGAAGGCGGCGCGTGAACTGGCCCGCGGCCACG 154521 Query 23249 TACTTTTGGTACAACGCGTCAAATTC-GGCACCGTAACAGTCGGCCAGGCCGGGCGATTG 23307 || ||| | ||| ||| | ||| || | ||| | ||||| || | | Sbjct 154520 TATCGGGCGTAGAGCGCTGTAAACGCAGGCCCCACGGC-GTCAGTGAGGCCTGGGCAGCG 154462 Query 23308 CATCGGAC-ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCG 23366 |||| | ||||||| ||| ||| | | ||||| | ||| || || | Sbjct 154461 G-TCGGGCGACATGAGGAACCAGTCCTCGTCGTCATGCACGCGGCGCATGAACTCGTCGG 154403 Query 23367 GTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTT 23426 | | ||| || || ||| || ||||| | ||| || ||| ||| ||||||| | Sbjct 154402 GCACCCACAGTGCCAGGAAGAGGTCGCGCGTCCGCTCCGTCTCGGCGCCTGTGTTCTGTC 154343 Query 23427 TCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGC 23486 || |||| ||| ||| ||||||| || ||||| ||||| | ||| || || | || || Sbjct 154342 GTAACTCCACAAACTCCCACACGTCGGCGTGCCATGGCTCCAAGTACACCGCGATCGAGC 154283 Query 23487 CCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCA 23546 || | ||| ||| || | | || || || || | |||| |||| | |||| Sbjct 154282 CCTTGCGCTT---GCCCGATTGGTTGCAATACCGTGCGGTCTCGTTGAACACCTTGAGCA 154226 Query 23547 TCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAA 23606 | ||||||| |||| |||| |||| || | | | ||| || || || || | Sbjct 154225 TGGGCACGATGCCGTCGGACCGGCCGTTGGTGCTCATGATGCGCGAGCCCTTGGCACGGA 154166 Query 23607 CGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCA 23666 |||| ||||| | ||| ||||| || || | || || || |||||| ||| | Sbjct 154165 TGTTGCTGACGTGCACACCGATGCCGCCAGCCCACTTGGAGATG--CGCGCACTGTCGGA 154108 Query 23667 GA--GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCA--AGAAA-CACGA 23721 | || | | |||| || ||||||||||| | || | ||| ||||| ||||| Sbjct 154107 TATGGTTTTGAAGATACCATCGATGCTGTCGTG------CGTGCCCAGCAGAAAGCACGA 154054 Query 23722 AGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTA 23781 ||||| ||| | | |||| | || || || |||||||||||||||||||| | Sbjct 154053 CGACATCTGCTCGTGCCGCGTGCCTGCGTTAAAGAGCGTCGGGCTGGCGTGCGTAAAATG 153994 Query 23782 TCCATTCGACAT 23793 |||| |||||| Sbjct 153993 GCCATGCGACAT 153982 >seq12 Length=425388 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||| ||||| || |||||| | || ||||| |||| Sbjct 400613 CATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTC 400554 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| |||| || ||||||||| || | || |||||||| Sbjct 400553 TGACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400494 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 400493 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGA 400458 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| ||||| || |||||| | || || || |||| Sbjct 400841 CATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTC 400782 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| |||| || ||||||||| || | || |||||||| Sbjct 400781 TGACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400722 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 400721 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGA 400686 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| ||||| || ||||| | || || || |||| Sbjct 401297 CATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTC 401238 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| |||| || ||||||||| ||| | || || ||||| Sbjct 401237 TGACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 401178 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 401177 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGA 401142 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| ||||| ||||| || |||||| | || || || |||| Sbjct 401069 CATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTC 401010 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| |||| || |||||||| || | || |||||||| Sbjct 401009 TGACACCATTGACAACGTCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCA 400950 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || ||||| ||| |||| || Sbjct 400949 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGA 400914 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || || || |||| Sbjct 401993 CATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTC 401934 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| |||| || ||||||||| || | || |||||||| Sbjct 401933 TGACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 401874 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 401873 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGA 401838 >seq2 Length=533353 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||| ||||| || ||| | |||||||||||| || | ||| Sbjct 425325 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCACGCGTAAAAGTGCAGCGAG 425384 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | |||| |||| ||||||||||| ||||| ||||| Sbjct 425385 GTGAGCTTGCCGAAGTTGGGGTCGCTCATGAACACGTTGAACGACTGGCTCTGGTCGATG 425444 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 |||| || || || || ||||| | | || || ||| | || ||||| || ||| Sbjct 425445 TACGCGCCGCGGTCCGCCGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCAGACCGTC 425504 Query 22325 TTGTACAG 22332 ||||| || Sbjct 425505 TTGTAGAG 425512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743543327840