Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1341 125 1e-23 seq2 114 2e-20 >seq1341 Length=23566 Score = 125 bits (138), Expect = 1e-23 Identities = 154/206 (75%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACT 125428 ||||| || |||| | | ||||||| | | || ||| ||||| |||| | || Sbjct 13993 AAGGCGCAGTGGGCGCTCAAGTGGATCACCGGCAACGAGTGCTTCG----CCGAGCGCCT 13938 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTT 125487 |||||| || || || || |||||||||||||| ||| | ||| ||| ||||||| | Sbjct 13937 GGTGGCGTTTGCGGCGGTTGAGGGCATCTTCTTCAGCGGCTCGTTCTGCT-CCATCTTCT 13879 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 |||||||||||||||| ||||||||||| || || | |||||| | || || || | Sbjct 13878 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCCAACGAGCTCATCTCGCGTG 13819 Query 125548 ACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||| | ||||| ||||||||| Sbjct 13818 ACGAGGGCATGCACTGCGACTTTGCC 13793 >seq2 Length=533353 Score = 114 bits (126), Expect = 2e-20 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAG--ACGCTGATCGATATGGCTGCCGACAG 98095 |||||||||| ||||||||||| | | || |||||| | || ||||| || ||| | Sbjct 425511 TCTACAAGACGGTCTGGGAGAT--CAAGCAGCGCACGCTGGTGGACATGGCGGCGGACCG 425454 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAG 98155 || | ||||| |||||||| || |||||||| ||| | | ||| |||| || | | Sbjct 425453 CGGCGCGTACATCGACCAGAGCCAGTCGTTCAACGTGTTCATGAGCGACCCCAACTTCGG 425394 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||| | ||||||||||| ||| ||||||||||||||| ||||||||||| Sbjct 425393 CAAGCTCACCTCGCTGCACTTTTACGCGTGGCGCAAGGGCCTCAAGACCGGCATGTACTA 425334 Query 98216 TCTG 98219 ||| Sbjct 425333 CCTG 425330 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| |||||| || ||| ||||| ||||| || | || | ||| ||||||||| Sbjct 427924 CTGTGGTTTGCCATCATGGAGGCGCAGGTGGAGACCGGCAACCCCTTCATGCTCTACAAG 427865 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || | || || ||||| |||||| | || |||||||||||||| ||||||| ||| Sbjct 427864 GACAGCGCCAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTG 427805 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCC 97327 ||||| || || | |||||| |||| || Sbjct 427804 TGCACAGAGATCATCGAGTACACCTCACC 427776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741021202189520