Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq879 100 2e-16 seq12 91.5 1e-13 >seq879 Length=48288 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| ||||| ||||| || |||| || | | ||||| Sbjct 4017 CACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTC 3958 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 3957 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 3898 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | ||| || || || ||| || | || |||||||| Sbjct 3897 GATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTTTT 3838 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 3837 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| || |||| || | | ||||| Sbjct 2717 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTC 2658 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || |||| || | |||||| ||| ||| | |||||| ||||| Sbjct 2657 CAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 2598 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | ||| || || || ||| || | || ||||| || Sbjct 2597 GATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTT 2538 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 2537 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 >seq12 Length=425388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || |||| || | | ||||| Sbjct 400403 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400462 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || |||||| | || || | |||||| || ||| | ||||| ||||| Sbjct 400463 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 400522 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | | | || || | ||| || | ||| ||||| || Sbjct 400523 GATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTT 400582 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||||||||| ||||| Sbjct 400583 GCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| || |||| || | | ||||| Sbjct 400859 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400918 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| || ||| | ||||| ||||| Sbjct 400919 CAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTG 400978 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | | | || || | ||| || | ||| ||||| || Sbjct 400979 GATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTT 401038 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||||||||| ||||| Sbjct 401039 GCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || |||||||| |||| || | | ||||| Sbjct 401087 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCCTC 401146 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| || ||| | |||||| ||||| Sbjct 401147 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 401206 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | ||| || || | ||| || | || ||||| || Sbjct 401207 GATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTT 401266 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| ||||| ||||| Sbjct 401267 GCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || |||| ||| | | ||||| Sbjct 401783 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTC 401842 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || |||||| | || || | |||||| || ||| | ||||| ||||| Sbjct 401843 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 401902 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | ||| || || | ||| || | || ||||| || Sbjct 401903 GATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTT 401962 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || |||||||| || ||||| Sbjct 401963 GCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| || || ||||| || |||| || | | ||||| Sbjct 400631 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400690 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || |||||| | || || | |||||| || ||| | ||||| ||||| Sbjct 400691 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 400750 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | | | | || || | ||| || | ||| ||||| || Sbjct 400751 GATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTT 400810 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| ||||| ||||| Sbjct 400811 GCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414552074210188