Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq879 105 6e-18 seq12 96.9 3e-15 >seq879 Length=48288 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || | |||||||||||||| ||| || | Sbjct 2699 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 2640 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | ||||||||| ||| || | | ||||||||| || |||||||||| | Sbjct 2639 AATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 2580 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || ||||| || || || || || ||| Sbjct 2579 GTCG--ATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 2522 Query 48713 ACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 2521 ACAAAGATCTGCAT 2508 Score = 105 bits (116), Expect = 6e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| ||||||| || | |||||||||||||| ||| || | Sbjct 3999 CTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 3940 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| ||| || | | ||||||||| || |||||||||| | Sbjct 3939 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 3880 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || |||||||| || || || || || Sbjct 3879 GTCG--ATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTG 3822 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 3821 ACGAAGATCTGCAT 3808 >seq12 Length=425388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||| |||||| || ||||||||||||||| Sbjct 401070 CCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 401129 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| ||| | | || | |||||||| || || Sbjct 401130 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGA 401189 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || |||||||||| | | || ||||| || | ||||| Sbjct 401190 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCG--ATGGTGTCAGACGACTCGA 401247 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || || || ||||||||||| Sbjct 401248 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||| |||||| || |||||||| |||||| Sbjct 401766 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 401825 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || | |||||||||||||| || | | || | |||||||| || || Sbjct 401826 AGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 401885 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | || ||||||||| || |||||||||| | | || ||||| || | ||||| Sbjct 401886 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCG--ATGGTGTCAGACGACTCGA 401943 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || || ||||| |||||||| Sbjct 401944 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||| |||||| || |||||||| |||||| Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| || | | || | |||||||| || || Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| || |||||||||| | ||||| || | ||||| | Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACC 400565 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || || || || |||||||||||||| Sbjct 400566 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || || |||||| || |||||||| |||||| Sbjct 400842 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 400901 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| ||| | | || | ||||||||| || || Sbjct 400902 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 400961 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||| || |||||||||| | ||||| || | ||||| | Sbjct 400962 ATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACC 401021 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || || || || |||||||||||||| Sbjct 401022 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||| |||||| || |||||||| |||||| Sbjct 400614 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400673 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| || | | || | |||||||| || || Sbjct 400674 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400733 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| || |||||||||| | ||||| || | ||||| | Sbjct 400734 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACC 400793 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || || || || || ||||||||||| Sbjct 400794 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421230140336102