Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq879 122 8e-23 >seq12 Length=425388 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | ||| ||||| || ||| | | Sbjct 401082 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCA 401141 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| ||||| ||||| || || ||| Sbjct 401142 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 401201 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | ||| ||||||| ||||| |||| ||||||| Sbjct 401202 TCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATG 401261 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || || || |||||||||| Sbjct 401262 GTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATGC 401298 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | ||| || || || ||| | | Sbjct 401778 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCA 401837 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| || || || ||||| || ||| Sbjct 401838 TCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 401897 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | ||| ||||||| ||||| |||| ||||||| Sbjct 401898 TCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATG 401957 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || |||||||||||||||| Sbjct 401958 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGC 401994 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||||| ||||| || | ||| || || || ||| | | Sbjct 400854 CGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA 400913 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || ||||| || ||| Sbjct 400914 TCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTG 400973 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | | | ||||||| ||||| |||| |||||| Sbjct 400974 TCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATG 401033 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || ||||| |||||||||| Sbjct 401034 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATGC 401070 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | ||| || || || ||| | | Sbjct 400398 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA 400457 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| || || || ||||| || ||| Sbjct 400458 TCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 400517 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | | | ||||||| || || |||| |||||| Sbjct 400518 TCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATG 400577 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || ||||| |||||||||| Sbjct 400578 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATGC 400614 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || || ||||| || | ||| || || || ||| | | Sbjct 400626 CGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA 400685 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| || || || ||||| || ||| Sbjct 400686 TCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 400745 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | | | ||||||| ||||| |||| |||||| Sbjct 400746 TCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATG 400805 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || || || |||||||||| Sbjct 400806 GTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATGC 400842 >seq879 Length=48288 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||| || ||| | | Sbjct 2722 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA 2663 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | || || | | ||||| || || ||||| || || ||| Sbjct 2662 TCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2603 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | ||| ||||||| || || |||| |||||| Sbjct 2602 TCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATG 2543 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||||||||||||||||| Sbjct 2542 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2506 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || || || ||| | | Sbjct 4022 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA 3963 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || ||||| || || ||| Sbjct 3962 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3903 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||| | ||| ||||||| || || |||| |||||| Sbjct 3902 TCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATG 3843 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| || || || || ||||||||||||| Sbjct 3842 GTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATGC 3806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448268213868720