Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq3865 679 0.0 seq2255 603 1e-167 >seq3865 Length=1303 Score = 679 bits (752), Expect = 0.0 Identities = 725/955 (76%), Gaps = 2/955 (0%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| |||||| |||| || || ||||| | || | ||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||||||| | | |||| | ||||| || || | |||||| | || || || Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || || || ||||| ||||| ||||| ||| |||||||| || | ||||| || || Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 |||||| ||||||||||| |||||| || ||||| || || | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 ||||||||||| ||| | || |||||| |||| || ||||||||||| ||| || | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||||| | | ||||| | || ||||||||||| || |||||| | |||| ||| Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| || ||||| ||| |||||||| || || ||||| ||||||||||| Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 |||||| | ||||||| | || |||||||| ||| ||| |||||||| | || || Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 |||||| ||||| |||| |||| | || ||||| || ||||||||||| || ||||| || Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||||||||| || |||||||| || || ||||||||| | |||||||| ||||| || Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 ||| | || || ||| | | | ||||| || ||||| ||||| ||| ||| Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||| ||||||||||| ||||| || |||||||| || |||||||| |||||||| || Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | || |||||||| || || ||||||||||||||||| ||||||| ||| | || Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 |||||||||||| ||||||||||||| |||| | || |||| || ||||| ||||| Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAA 1118 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 ||| || || |||||||||||||| || |||| ||| ||||||||||| | ||||| Sbjct 1119 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACAC 1178 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||||| || | | || |||||| | |||||||| || |||||||| ||| Sbjct 1179 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGT 1233 >seq2255 Length=6208 Score = 603 bits (668), Expect = 1e-167 Identities = 750/1020 (74%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 137862 TGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCT 137921 |||||||||| | || |||||| | | ||| || || ||||| || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 137922 GGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACG 137981 ||| || |||| || || |||||| || || | ||||| ||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 137982 TTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTC 138041 |||||||| |||||||| ||||| || || || ||| | ||||| ||| ||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 138042 CTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 138100 | || || |||||||| || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 138101 GGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTT 138160 ||||||||| ||||||| || | || |||| |||||||| || | ||| |||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 138161 TGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTC 138220 | | || | ||||| | ||| || | ||||| |||||| | || || ||||| ||| | Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 138221 TCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTT 138280 ||| || | | ||||| |||||||| || |||||||||| ||| || ||||| || Sbjct 680 ACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATT 739 Query 138281 --CGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCC 138338 | ||| || ||| | || || ||||| |||||||| |||||||||||||||| Sbjct 740 CACTTCA--GTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 138339 TTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACC 138398 |||||||| || ||||||||||| ||| | || ||| | ||||| ||||| |||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 138399 CTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCT 138458 || ||||| || || |||||||| || || ||| || | |||| |||| | | |||||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 138459 ATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTT 138518 ||||| |||||||| || ||||| || || | |||||| || || | || || || Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 138519 AAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTAC 138578 ||||| | || ||||||| ||||||||| || || ||||||||||| ||||||| | Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 138579 TGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTC 138638 ||||| |||||||| || ||||||| || || |||||| | |||||||| ||| | Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 138639 TTTGTTCCCGTCATGGGTCTCTGGACTAGTAG-TATTGGTATTATTGGTCTTGCTCTTAA 138697 || || || || | ||| | |||| | || ||||||| | |||||| | || | || Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGA-TGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 138698 CCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGA 138757 | |||| || || || ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 138758 GACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGT 138817 || |||||||| || ||||| ||||| ||||||||| | ||||| ||||||||| || Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 138818 GGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || ||||| || ||| || || || || ||||||||||| || | || |||||||| Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627935800940800