Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3865 556 4e-154 >seq3865 Length=1303 Score = 556 bits (616), Expect = 4e-154 Identities = 723/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||||||||| | || ||| || ||||| | || | ||||||||||| ||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||||||||| || | || || || || || |||| || | ||||| || Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || || || || || || ||||| |||||||| || || ||| | ||||| ||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || ||| | || | || || || || || | ||||| || || | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | ||||||| ||||||||||||||||| ||||| || ||| | | || Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 19590 TTCCACTTCTTAATAGGAGTA-GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | |||||||||| |||| || || || ||| ||| | | |||||| |||||| | | Sbjct 580 TGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 ||||| ||| | |||||||| ||||| || | |||||| | |||| ||| ||| Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 19709 TGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || || | | ||||| | || ||||| || ||| ||||||||| | ||||| Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||| ||| ||||||||||||| |||||||| ||||||||||| || Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 ||||||||| | ||||||||||| || || ||||| ||| | |||||||| |||||||| Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||| ||||| || || | ||| ||||||||||| | | ||| ||| ||| Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || ||||| ||||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 | || || || ||||| ||||| ||||| || |||||||| ||||| ||||| | || Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || | || || ||| | || | | || | | |||||||||||||| Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAA 1118 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAA 20187 |||||| ||||| ||||| ||||| ||||| ||||| | |||| || || | | Sbjct 1119 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAA-GGTCGTGTATTAAACA 1177 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | |||||||| | | || | |||||| | || | ||||| |||||||| || || | Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 | || |||||||| || || |||||||| | ||| Sbjct 1238 CGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144434564069112