Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3865 699 0.0 seq292 87.8 3e-12 >seq3865 Length=1303 Score = 699 bits (774), Expect = 0.0 Identities = 750/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 ||||| || ||| | || || || | ||| | | || | |||||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 ||||| || || | || | |||||| | || ||| | || ||| | ||||| ||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || ||||| |||||||| |||||||||||||| ||||||| || | || ||||||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 ||||| |||||||| || | || |||| ||||| || |||||||||||||| || | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869 |||||||| ||| || | || |||||| | ||||| |||||||||||||| || | | Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 211870 TTCCACTTCCTTATCGGAATCT-CAGCATACATGGGAAGACAGTGGGAACTTTCATACCG 211928 | ||||||| | | || | | | || |||||||| | | |||||| | || | ||| Sbjct 580 TGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 211929 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGC 211988 ||||||||||||||| |||||| ||| ||||| || ||||| || |||| ||| || Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 211989 TGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTAT 212048 || ||| | | ||||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 212049 ATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCC 212108 || || || |||||||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 212109 ATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGG 212168 |||||| ||| ||||||||| ||| | || ||||| | ||||||||||| |||||||| Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 212169 TTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGG 212228 |||| | ||||||||||| | ||||||||||| |||| || ||| ||| ||| Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 212229 TTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGG 212288 |||| ||||| ||||| ||||| ||||| |||||||| ||||| || || ||||| || Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 212289 TAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGC 212348 | | | || ||||| || || |||||||||||| | |||||||||||| | || Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 212349 ATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAA 212408 | |||||||| ||| || | ||||| || || | ||| | | || ||||| ||||| Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAA 1118 Query 212409 CCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTAC 212468 ||| || || |||||||||||||||||||||||||| | |||| || | || Sbjct 1119 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACAC 1178 Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528 ||||| ||| | | ||| | || ||| | ||||||||||| ||||||||| | || || Sbjct 1179 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 1238 Query 212529 ACACAACTTCCCACTTGACTTAGCATCTG 212557 ||||||||||| || |||||||| |||| Sbjct 1239 GCACAACTTCCCTCTAGACTTAGCTTCTG 1267 >seq292 Length=128933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 211765 GTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACT 211824 || || ||| |||| ||||| || |||||||||||||| || | |||||||| ||| || Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 211825 CTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATC 211884 | || || ||| | ||||| |||||||| |||| || || | | |||||| |||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTATC 40671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807513792607120