Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3865 713 0.0 seq2255 531 6e-146 seq292 98.7 1e-15 >seq3865 Length=1303 Score = 713 bits (790), Expect = 0.0 Identities = 760/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||||||||| | || || ||||| || || | ||| | |||||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||| || || | |||| || | || ||||| | || ||| | || |||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| || |||||||| ||| | ||||||||| | |||||||| ||||| ||||||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||| |||||||||||| | || |||| ||||| || || ||||||||||| || | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | ||||||||||| |||||||| ||||||||||| ||| | || Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 170966 TTCCACTTCCTTATT-GGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 | |||||| |||||| || | | ||| |||||||||| | | |||||| |||| | | Sbjct 580 TGCCACTT-CTTATTAGGTGTTTGCTG-CTACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | |||| ||| | || ||||| |||||| ||||| ||||| || | || || || Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 |||| ||| | | || || ||||||| |||||||||||||| |||||||| |||||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 | || ||||| |||||||||||| |||| |||||||| ||||||||||| || ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | ||||| ||| |||||| || ||| | || |||||| | | ||| ||||||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA--AAACTA 171321 ||||| |||| ||||||||| ||||| | || |||||||| ||| || ||| ||| Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACGC 935 Query 171322 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 171381 || || ||||| ||||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 936 TGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTT 995 Query 171382 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 171441 ||| | ||||| ||||| || || ||||||||||||||||||||||||||||||||| | Sbjct 996 TGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 1055 Query 171442 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 171501 |||| | |||||| || || | ||||| || || | ||| | | || ||||| || Sbjct 1056 AGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTT 1115 Query 171502 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACC 171561 |||||||||||| ||||||||||||||||||||||| || | | || | || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 || |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 171622 TGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || ||||||||||| |||||| |||| |||| ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 531 bits (588), Expect = 6e-146 Identities = 735/1028 (71%), Gaps = 23/1028 (2%) Strand=Plus/Plus Query 171806 TGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTT 171865 ||| || |||||| ||| |||||||||||| | || ||||| || | ||||| || Sbjct 335 TGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATT 394 Query 171866 ACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATG 171925 ||| ||||||||| | ||| | || |||||||| || |||||||| || || || || Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 171926 GTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGT 171985 ||||||||| || | || | || || | || || ||||| |||||||| || || Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 171986 ATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACA 172045 || ||||| | || |||| ||| | |||| ||| ||||||| ||||| || || Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCTTTATTATTCTTATGGGGTCCTGAAGCTCA 574 Query 172046 AGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGG 172105 ||| || || ||| |||| |||| | || || ||||| ||| | || ||||| || Sbjct 575 AGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGG 634 Query 172106 AGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGAT 172165 ||||| | || ||||||||| | | || ||||| || ||| | ||| | Sbjct 635 TTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACTT 694 Query 172166 ACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTC- 172224 |||||| |||||||| | |||||||| || |||||| |||||||| || |||| Sbjct 695 ACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCAC-TTCAGTTTTCT 753 Query 172225 TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAA 172284 |||| || || |||||||| |||||||||| || ||| |||||||| || |||| Sbjct 754 TAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAA 813 Query 172285 TCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATA 172344 |||| |||| || |||||| | ||||| |||||||| || ||||| ||||| || | Sbjct 814 TCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACA 873 Query 172345 TGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAG 172404 |||||||||| || ||| | | |||| || ||| ||||||| || || ||||| || | Sbjct 874 TGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTG 933 Query 172405 TACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAA 172464 | | |||||||| | ||||| || ||| ||| || || | Sbjct 934 TTGAAAACACATTATTTGAAG------------ACGGTGACGGTGCGA--------AC-A 972 Query 172465 CTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACA 172524 | ||| | |||||| | || || || | ||||||||| || |||| ||||||| ||| Sbjct 973 CATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACC 1032 Query 172525 GATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTA 172584 | |||||||| || || || ||| | || || ||||||||| | | ||||||||| | | Sbjct 1033 GTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCA 1092 Query 172585 TGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCAC 172644 |||| |||||||| || | ||| | |||| ||| |||| ||| | | ||| | ||| Sbjct 1093 TGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCAT 1152 Query 172645 TTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGT 172704 | ||| | | || |||||||| || || ||||| || | ||||||||||||||||||| Sbjct 1153 TAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGT 1212 Query 172705 TTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCAT 172764 | ||||| ||||||||||| ||||| ||||||||||||||||| | || |||||| | Sbjct 1213 TCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTG 1272 Query 172765 CTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACG 172824 || || ||||| ||||| || || |||||||||||||| || || || || |||| Sbjct 1273 CTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACG 1332 Query 172825 CACTATAA 172832 | |||||| Sbjct 1333 CTCTATAA 1340 >seq292 Length=128933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 170859 CTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCA 170918 ||||||| ||| |||| ||||| || || ||||||||||| || | |||||||| || Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 170919 CTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTA 170978 || | ||||| ||||| |||||| | |||||| |||| ||||| | | |||||| |||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTA 40673 Query 170979 T 170979 | Sbjct 40672 T 40672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570239559467280