Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 >seq2 Length=533353 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| ||||| || ||||| || | ||| ||| |||| ||||||||||||||||| || Sbjct 427960 GAGGGCAAGGCGCGCAAGACCATCCGCGCGCAGCAGCTGTGGTTTGCCATCATGGAGGCG 427901 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||| | ||||| || | |||| ||| | ||||| || |||||||||||||||| Sbjct 427900 CAGGTGGAGACCGGCAACCCCTTCATGCTCTACAAGGACAGCGCCAACCGCAAGTCCAAC 427841 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| |||| || || || || |||||| || || ||||| || || |||||| Sbjct 427840 CAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACAGAGATCATCGAGTACACC 427781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303285099807764