Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq879 143 3e-29 seq12 143 3e-29 seq83 104 2e-17 seq1341 96.9 3e-15 >seq879 Length=48288 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| ||||||||||| || Sbjct 4035 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGC 3976 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 3975 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 3916 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| |||||||||| | || | || || | ||||| | Sbjct 3915 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAAC 3856 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || || || || ||||| ||||||||| Sbjct 3855 CTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 2735 GCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2676 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| | || | ||||||||||||||| || Sbjct 2675 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGG 2616 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| |||||||||| | || | || || | ||||| | Sbjct 2615 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAAC 2556 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 2555 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2507 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 2507 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2448 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 2447 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 2388 Query 131127 GATTCCT 131133 || ||| Sbjct 2387 AATGCCT 2381 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| | || | ||| |||||||| || |||||||| || | Sbjct 3276 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3217 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || | || | |||||||||||||| ||| Sbjct 3216 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGTGGG 3157 Query 131128 ATTCCT 131133 || ||| Sbjct 3156 ATGCCT 3151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 3807 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 3748 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || | || | |||||||||||||| || Sbjct 3747 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGTGG 3688 Query 131127 GATTCCT 131133 ||| ||| Sbjct 3687 GATGCCT 3681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||||| | || | || |||||||| || |||||||| || | Sbjct 4670 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4611 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | |||||| |||||||| || Sbjct 4610 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCCGGGGGA 4551 Query 131128 ATTCCT 131133 || ||| Sbjct 4550 ATGCCT 4545 >seq12 Length=425388 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||||||| || || | || |||||||| || |||||||| || Sbjct 400613 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 400672 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 400673 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 400732 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||||| | || | || || | ||||||| Sbjct 400733 GATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGAC 400792 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||||||||||||| Sbjct 400793 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||||||| || || | || |||||||| || |||||||| || Sbjct 400841 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 400900 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 400901 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 400960 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||||| | || | || || | ||||||| Sbjct 400961 GATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGAC 401020 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 401021 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| || || | || |||||||| || ||||||||||| Sbjct 401069 GCCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGC 401128 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 401129 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 401188 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| |||||||||| | || | || || | ||||||| Sbjct 401189 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 401248 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||||||||||||| Sbjct 401249 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| || || | || |||||||| || |||||||| || | Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| |||||||||| | || | || || | ||||| | Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACC 400565 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 400566 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||||||| || || | || |||||||| || |||||||| || Sbjct 401765 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 401824 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 401825 CAGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 401884 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||||| | || | || || | ||||||| Sbjct 401885 GATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 401944 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 401945 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 401993 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||||||| || || | ||| |||||||| || |||||||| || Sbjct 401297 GCCGCCGCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 401356 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 401357 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 401416 Query 131127 GATTCCT 131133 ||| ||| Sbjct 401417 GATGCCT 401423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||||||| || || | || |||||||| || |||||||| || Sbjct 401993 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 402052 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 402053 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 402112 Query 131127 GATTCCT 131133 || ||| Sbjct 402113 AATGCCT 402119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| || | Sbjct 402522 CCACCACGCAGGCGCAGCACGAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 402581 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 402582 AACGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 402641 Query 131128 ATTCCT 131133 || ||| Sbjct 402642 ATACCT 402647 >seq83 Length=234864 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| ||||||||||| || Sbjct 63347 GCCACCGCGCAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGC 63288 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| |||||||||||||| |||| | |||||||||||| || || Sbjct 63287 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGG 63228 Query 131127 GATTCCT 131133 || ||| Sbjct 63227 AATGCCT 63221 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || ||||| || || | || ||||| || || || ||||| || Sbjct 62874 CCGCCACGCAGGCGAAGCACCAAGTGCAACGTAGACTCTTTCTGGATATTGTAGTCAGCA 62815 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || |||||||||||||| |||||| |||||||||||||||||| Sbjct 62814 AGGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATTAGGCGCTGCTGGTCCGGAGGG 62755 Query 131128 ATTCCT 131133 || ||| Sbjct 62754 ATGCCT 62749 >seq1341 Length=23566 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 46111 TGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTT 46170 |||||| | |||||||||| | ||| | | | ||||||||||| ||||||| ||| Sbjct 13984 TGGGCGCTCAAGTGGATCACCGGCAAC---GAGTGCTTCGCCGAGCGCCTGGTGGCGTTT 13928 Query 46171 GCGATTGTGGAGGGCGTCtttttttCTGGC-AGTTTTGCCGCCATCTTTTACATCAAAAC 46229 ||| || |||||| |||| || ||| ||| || | ||||||| | |||| | Sbjct 13927 GCGGCGGTTGAGGGCATCTTCTTCAGCGGCTCGTTCTG-CTCCATCTTCTGGCTCAAGAA 13869 Query 46230 CAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCT 46289 ||| |||||||||| || || || ||||||||| || ||||| ||||||||| | Sbjct 13868 GCGCGGCCTCATGCCCGGGCTTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCAT 13809 Query 46290 GCATACGGACTTTGCGTG 46307 ||| |||||||| || Sbjct 13808 GCACTGCGACTTTGCCTG 13791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471988597543680