Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3865 753 0.0 seq2255 529 2e-145 >seq3865 Length=1303 Score = 753 bits (834), Expect = 0.0 Identities = 769/996 (77%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113 ||||| || ||| |||| ||||| | |||||| | || | ||||||||||| | | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACC 166172 |||||||| | || ||||||| |||||| |||||| |||||||||| || || || Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || || ||||| || |||||||| || || | || ||| || | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 |||||| ||||||||||| |||| | || ||||| |||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 |||||||| ||||| | || || ||| | || ||||||||||||| ||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 166353 CTTCCACTTCCTCATCGGCATCTATGC--CTACATGGGTCGTGAATGGGAATTGTCTTAC 166410 | ||||||| | | || | | ||| |||||||||||||||||||||||| |||| | Sbjct 579 TTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 166411 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 166470 || | ||||||||||| ||||| ||||| ||||||||||| |||||||| || | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 166471 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGT 166530 ||||| ||| | |||| ||| ||||||||||||| |||||||||| ||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 166531 ATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCAC 166590 || ||| || ||||||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 166591 CCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCAC 166650 || ||||| ||| | ||||| || ||||| || ||||| || | ||||| ||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 166651 GGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTAT 166710 || | | ||||| || || | ||||||| || ||||||| || || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770 |||||| || |||||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 166771 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTC 166830 ||||| | || |||||||||||||| |||||||||||||| || | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 166831 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGC-ACCATGGCATT 166889 || || |||||||| ||||||||||||| |||||| | ||| ||| | || ||||| || Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT-TTATCAACTATGGCTTT 1115 Query 166890 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 166949 |||||| |||||||||||||||||||| || | | || ||| |||||||| | || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 166950 CACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAA 167009 ||||||||| || || ||||||||||| | |||||||||||||||||||| ||||| Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 167010 TGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 || |||||||||||||| || | ||| ||| ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 529 bits (586), Expect = 2e-145 Identities = 735/1021 (72%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 ||||| |||| | || |||||| | | ||||| || || || || || ||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 167357 GGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 |||||| | || || || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTT 167476 |||||||| ||||| || ||||| || || || |||| | || ||| ||| || Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 167535 | || || || || || || || || | |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| |||| || || || | | ||||| || ||||| || | |||||||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGAT--- 167652 | | || | ||||| | |||| | | || || || ||| | || |||||||| || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 167653 AAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGT 167712 | || | | || | | ||||| ||||| || ||||| || |||| ||| |||||||| Sbjct 680 ACGTTCAGT--TAACT-TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 167713 CTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTC 167772 || || ||||| | || || ||| | || || || ||||||||||||| || Sbjct 737 ATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 167773 GTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGAC 167832 ||||||||||| || || || | ||| | ||||| | ||||| ||||| |||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 167833 GCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGC 167892 ||| ||||| ||||| |||||||| ||||||||| | |||| | ||| || | | ||| Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 167893 AATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTT 167952 || || |||| ||| || || || || | | |||||| ||||| || ||||| || Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 167953 CAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATT 168012 | ||||| | | ||||| | ||| ||||| || || ||||| ||||| ||||| || Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 168013 CTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCT 168072 |||||||||||| || ||| |||||||| || || |||||||| |||||||| ||| | Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 168073 TTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAA 168132 ||||| || || | || | |||| |||||||| | || ||| | ||| |||| Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCA-TTAA 1155 Query 168133 TCTT-CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTG 168191 ||| |||||||| ||||| || || || ||| || | |||||||| || |||||||| | Sbjct 1156 ACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCG 1215 Query 168192 AAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAG 168251 |||| ||||| || ||||||||||| || |||||||| | ||||| ||||||||| | Sbjct 1216 AAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTC 1275 Query 168252 TAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTC 168311 ||||||||| |||||| || |||||||||||||||||||| || | || ||||||| Sbjct 1276 AAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTC 1335 Query 168312 T 168312 | Sbjct 1336 T 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567202915179200