Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq112 129 1e-24 seq5 114 3e-20 seq3164 105 1e-17 seq1645 105 1e-17 seq517 105 1e-17 seq282 104 5e-17 seq31 102 2e-16 seq135 87.8 4e-12 >seq112 Length=209331 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| || || |||||||||||||||||||| | ||| |||| || || Sbjct 130619 GTCGGCTCGCTGTCCGGCGGCTGGAAGATGAAGCTGGCCCTGGCGCGCACCATGCTGATG 130678 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||| |||| ||||| || ||||||||||||||| ||||| || ||||| Sbjct 130679 AACCCCGACATCCTGCTGCTGGACGAGCCAACCAACCACTTGGACGTCAAGAACGTCAAG 130738 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| ||| | || | || || || |||| || || |||||| Sbjct 130739 TGGCTGGAGGACTACCTGGTCAGCCAGACGGGCGTGTCCGCCATCATCGTGTCGCACGAC 130798 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTA 279916 || |||||||| || ||||||||| ||||||| |||| Sbjct 130799 TCCGGCTTCCTGGACCACGTGTGCTCCCACATCATTGACTA 130839 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 279339 GAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTG 279398 ||||| ||||| || ||||| |||| || ||||||||||| || || | ||||| ||| Sbjct 129941 GAGCCCGGTGACGAGCTGTGCAACTGCGAGTTCTCGCTCGCGTACGGCGCCAAGATCCTG 130000 Query 279399 CTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAAT 279458 || ||| || || | | ||||| ||| ||| || || || ||| ||||| Sbjct 130001 CTCAACAACGCCACGCTGCGCCTGAAGCGCGGCCGCCGCTACGGCCTGTGCGGCCCCAAC 130060 Query 279459 GGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 || | || ||| ||| || ||||||||||| || ||||| ||| | || || || || Sbjct 130061 GGCGTCGGCAAGTCCACGCTGATGCGCGCCATCGCCAACGGCCAGGTCGACGGCTTCCCG 130120 Query 279519 AACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | |||| | | || | || || ||||||||||| ||| Sbjct 130121 CCCAAGAGTGAGCTGCGCACCATCTACGTGGAGCACGACATTGAC 130165 >seq5 Length=471533 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 182983 ATCAGGTCACCATTTCTGGAGATCTGTGTA-GACACCTTGTTGCCGAAGCCCACAGATCC 183041 |||||||| || |||| ||||| ||| | | ||||| ||||| || || | || || Sbjct 216968 ATCAGGTCGCCGTTTCGAGAGATG-GTGCACGTTACCTTCTTGCCAAAATCCGCCGAGCC 216910 Query 183042 ATTAATAGTTTGCTGGATGGACTCAACGGCGAAGTTGGTATACCGGCGGTACACCGTCTT 183101 ||| | || |||| ||||||||| | || ||||||||||| |||||||| ||| ||| Sbjct 216909 ATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTAGACCACCTT 216850 Query 183102 GAAGAATGTGATTTGGGGATTTCCAGTGAGGTAAACGTCCTGGGCACCATATGCAACTAA 183161 ||| || ||||| || || || || | ||||||| |||||| || ||||| || || | Sbjct 216849 GAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATAGGCGACCAG 216790 Query 183162 TTGTGAAAGTCCTCCCGCCATACTT 183186 || ||| || || |||| ||| Sbjct 216789 CTGCATAAGGCCACCGCCCATTCTT 216765 Score = 96.9 bits (106), Expect = 7e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 182481 CTCGGAGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGGCAGCTGGGCGAAGCG 182540 |||| ||| |||||||||||||||||||| ||||||||||| | | ||| |||||||| Sbjct 217563 CTCGTCGCCAGTGAACTGCAGCTGCTCGATGAGGTACTCGTGCGAGACCTGCGCGAAGCG 217504 Query 182541 GGTGCGCTCCTGGGTGTCCAGGAAGATGTAGTCGAC 182576 | | ||| | |||||| ||| ||||||||||||| Sbjct 217503 GCGTCTCTCGTCGGTGTCAAGGTAGATGTAGTCGAC 217468 >seq3164 Length=2050 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 159 AGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAG 218 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 219 CCCCTCATTGGGC 231 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1893 AGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAG 1834 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 1833 CCCCTCATTGGGC 1821 >seq1645 Length=14626 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 158 AGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAG 217 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 218 CCCCTCATTGGGC 230 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| |||||||||| ||||| ||||||| ||||||| |||||||||| Sbjct 5553 GCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTCGAGC 5612 Query 142564 CCCACATCGGGC 142575 ||| || ||||| Sbjct 5613 CCCCCACCGGGC 5624 >seq517 Length=84366 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 84203 AGCCCGGTTAGCTCAGTTGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGAGGGTTCGAG 84144 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 84143 CCCCTCATTGGGC 84131 >seq282 Length=131332 Score = 104 bits (114), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590 ||||||| || || |||||||| || | ||||| || || ||||||||| |||| | Sbjct 52025 AGGAGCTGATCCTGTTCTCGCGCGCCGACCTCGAGCGCTCCATCCCCAGCGTGATGGACG 51966 Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAG 218650 |||||||||| ||||| |||||||| | ||| | |||||||| |||| ||||| Sbjct 51965 GCCTCAAGCCGGGTCAGCGCAAGATCCTGTACGCCTCCTTCAAGCGCAACC----TCAAG 51910 Query 218651 AA----ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 || || |||||||| ||| | | | || || || || || | |||||| ||| Sbjct 51909 AAGGACATCAAGGTCGCGCAGCTGGCCGCGTACGTGTCGGAGCACTCGGCCTACCACCAC 51850 Query 218707 GGTGAGCAGAG 218717 || |||||||| Sbjct 51849 GGCGAGCAGAG 51839 >seq31 Length=337675 Score = 102 bits (112), Expect = 2e-16 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 142472 AGGTACCTGGATCGAAACCGGGTGGTGAGA-TAGCCCGGTTAGCTCAGTCGGTAGAGCGC 142530 |||||| ||||||||||| | | | | |||||||||||||||| |||||||||| Sbjct 5994 AGGTACGGGGATCGAAACCCTGCAGCTCCACTTGCCCGGTTAGCTCAGTTGGTAGAGCGC 5935 Query 142531 TAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACATCGGGCAGA 142578 ||||||||||||| ||||||| ||| ||||||||| ||| |||| || Sbjct 5934 CAGACTCTTAATCTGGTGGTCGAGGGATCGAGCCCCTCATTGGGCGGA 5887 >seq135 Length=196152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 258788 TGGCAGGTGTGTCCCTTCTTCGTTGGTCTCGCAGGAACAGGTAAGTCCCTGCTCGTCCTG 258847 |||||||| || |||||| || | ||| || || || ||||| |||| || || Sbjct 39095 TGGCAGGTCATCCCTTTCTTCAAAGGCCACGCCGGCACGGGCAAGTCGACGCTCCTCATG 39154 Query 258848 AAAGTCATTAAGCAGTTCTTCGAGACAGTCGACGTTGGTATCCTGTCTAACAACATTGAA 258907 ||| | | || |||||| | | ||||| ||| |||| ||||||||||| || Sbjct 39155 CGCGTCTGTGCCAACTTTTTCGAGCCCGAAGACGTGGGTGTCCTCTCTAACAACATCGAG 39214 Query 258908 CGGAAGTTCGGTATCTCTGCCTTCTTTGACAAGATGTTGGTGTGCGCCCCAGAGATCCGG 258967 || |||||||| | || || || || ||| | || | ||||||||| ||| | Sbjct 39215 CGCAAGTTCGGCCTGTCGGCGATCGCAGAGAAGCTCCTGTTCGTCGCCCCAGAAATCAAG 39274 Query 258968 AATGACCTTGCCATTGAGCAAGCAGAGTTCCAGTCTATTGTGTCAGGTGAGGAAATCTCG 259027 ||||| || |||||||| ||||||||| | |||||||| |||| | | | Sbjct 39275 GGGGACCTGCAGATGGAGCAAGCCGAGTTCCAGAGCGTCGTGTCAGGAGAGGCATGCCAG 39334 Query 259028 GTTGCCATCAAGCACCAGAAGGC 259050 | ||||||| || ||||||| Sbjct 39335 ATCAACATCAAGTACAAGAAGGC 39357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027782780109782