Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq879 114 1e-20 seq12 114 1e-20 >seq879 Length=48288 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | || || | || | |||||| || || ||||||||||| || Sbjct 4037 ATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCA 3978 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || ||| ||||||||||||| |||||||| Sbjct 3977 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 3918 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || || | | || | |||||| | || || Sbjct 3917 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCA 3858 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | |||||||| ||||| || || || || ||||||||| Sbjct 3857 ACCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 >seq12 Length=425388 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | || || || || | |||||| || || || |||||||| || Sbjct 400839 ATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCA 400898 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || || ||||||||||||| ||||| || Sbjct 400899 GCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGG 400958 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || || | | |||| |||||| | || ||| Sbjct 400959 GGGATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCG 401018 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| || || ||||||||||||||| Sbjct 401019 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || || | || || || || | ||| || || || || |||||||| || Sbjct 400611 ATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCA 400670 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || || ||||||| ||||| ||||| || Sbjct 400671 GCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGG 400730 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || || | | |||| |||||| | || ||| Sbjct 400731 GGGATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCG 400790 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| || || || |||||||||||| Sbjct 400791 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 ||||| || || | || || || || | ||| || || || || |||||||| || | Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| || || || || || || ||||||| ||||| ||||| || || Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || || | | |||| |||||| | || || || Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACC 400565 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || ||||| ||||| || || ||||||||||||||| Sbjct 400566 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || || || | ||| || || || || ||||||||||| Sbjct 401067 ATGCCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCA 401126 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || || |||| || ||||| ||||| || Sbjct 401127 GCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGG 401186 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || || | | || | |||||| | || ||| Sbjct 401187 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCG 401246 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| ||||| || || || |||||||||||| Sbjct 401247 ACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420113396168424