Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1341 154 3e-32 seq2 116 7e-21 seq12 95.1 2e-14 >seq1341 Length=23566 Score = 154 bits (170), Expect = 3e-32 Identities = 188/253 (74%), Gaps = 15/253 (6%) Strand=Plus/Minus Query 42608 GCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAA 42667 ||| ||| | |||| || || || |||||||||||| |||||| | ||||||||||| Sbjct 14033 GCTCTTCCACTCCATCGACACCATCCCCTGCATCAAGCGCAAGGCGCAGTGGGCGCTCAA 13974 Query 42668 CTGGATCGAGAGTCCCGACGCAACG-----TTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 |||||| ||| |||||| |||| |||| | ||||| || ||| | || Sbjct 13973 GTGGATCA------CCG--GCAACGAGTGCTTCGCCGAGCGCCTGGTGGCGTTTGCGGCG 13922 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGT 42781 || ||||||||||||||| ||| | ||| ||||||||||||||||||| || || Sbjct 13921 GTTGAGGGCATCTTCTTCAGCGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 13862 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || |||||||| || |||||||| ||||| |||||| | |||||||| |||| | Sbjct 13861 CTC-ATGCCCGGGCTTACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCATGCACTG 13803 Query 42842 GGACTTTGCCTGC 42854 |||||||||||| Sbjct 13802 CGACTTTGCCTGC 13790 Score = 104 bits (114), Expect = 4e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||||| |||||||| ||||| ||||| |||||| |||| || |||||||||| Sbjct 13386 GGGCATCATCATCGAGGCCGTTGAGATTGAGAACGAGTTCTGCACGGAGGCGCTGCCCGT 13327 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | |||| ||||||||||| || ||| |||| |||||||| ||| || || |||| Sbjct 13326 GGACCTGATCGGCATGAACAACCGCCTGATGTCGCAGTACATCAAGTTTGTGGCGGACCG 13267 Query 43025 TCTCCTG 43031 || ||| Sbjct 13266 CCTGCTG 13260 >seq2 Length=533353 Score = 116 bits (128), Expect = 7e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||||| || ||||| ||||| ||||| |||||||||||||||||||| ||| || Sbjct 427781 GGTGTACTCGATGATCTCTGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTG 427840 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||||||||| |||| | ||||||||||||||||||||| |||||||| | ||| Sbjct 427841 GTTGGACTTGCGGTTGGCGCTGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCCACCTG 427900 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC 244899 || | | || | ||| || | | || || ||| |||| ||||||||||| Sbjct 427901 CGCCTCCATGATGGCAAACCACAGCTGCTGCGCGCGGATGGTCTTGCGCGCCTTGCCCTC 427960 Query 244900 TGCCTCGTA 244908 |||||| Sbjct 427961 GCGCTCGTA 427969 Score = 104 bits (114), Expect = 4e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| |||||||||||||| || || | ||||||||| | | | | ||| || Sbjct 428612 CTCCATGAATAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTC 428671 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| |||||| | ||| || | |||||||| ||||| |||||||||||| || Sbjct 428672 CTTGCCGTGGTTCTTGCGCAGGTCGAGGAAGTCAAACACGTCAGAGTGCCAGGGCTCAAT 428731 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||| | |||| ||||| |||||| ||| ||||||||||| Sbjct 428732 GTACATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 428776 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||||| |||||| | || | |||||||| ||| |||||||||||| ||||| Sbjct 429036 CGTTGAAGACGCGCAGCATGGGGATGATGCCGTTGGAGGTGCCGTTGGTGCCGCGGATGT 429095 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 | | |||| || | | || |||| | ||||| ||| | ||||| ||| |||||||| Sbjct 429096 ACGAGCCCGTGGCGCGGATGTTGTGCAGGGACAGGCCGATGCCGCCAGCGCACTTGGAGA 429155 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTC 245331 ||| |||||| ||||| ||||| Sbjct 429156 TGACGGCGCACTCCTTGAGCGTGTC 429180 >seq12 Length=425388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 180/260 (69%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||| ||| || || || |||||||| || |||||| ||| | || Sbjct 263597 ATCTTCTGGCTGAAGAAGCGCGGCCTC-ATGCCCGGGCTGTGCTTCTCCAACTCCATGAT 263655 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 |||| | |||||||| ||||| | |||||||| ||| |||| | | ||||||| Sbjct 263656 CAGCCGCGACGAGGGCCTGCACTGCGACTTTGCTTGCGCGCTGTAC---GGGCACCTCAA 263712 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 |||||||| | | ||||||||| | | || |||| | || ||||| | ||| | Sbjct 263713 GCACAAGCTCCCCCTGGAGCGGGTGCTTGAGATTGTCACCGCCGCGGTGGACCTTGAGCA 263772 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGACCTCATG 42995 |||||| ||| | | || |||||| || | ||||| || ||||| |||||| Sbjct 263773 GGAGTTTTGCACCGACGCACTCAGCGTGTCGCTCCTGGGCATCAACGCCACG--CTCATG 263830 Query 42996 TGCAAGTACATCCAGTACGT 43015 | ||||||| ||||||| Sbjct 263831 GCCCAGTACATAAAGTACGT 263850 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| |||| || | |||| |||||||| || || |||||||| || |||||||||| Sbjct 262842 TTCATCAAGTACGTGTTGGCGTTCTTCGCAGCTTCAGACGGCATCGTGCTTGAGAACCTG 262901 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 || | | |||||||| || | ||| |||||| ||| |||||||| ||||| Sbjct 262902 GCTGCACGTTTCATGAACGACATTCAGGTGCCTGAGGCACGCGCTTTCTACGGTTTCCAA 262961 Query 42528 ATAGCCATAGAGAACGTGCAC 42548 || ||||| |||||||||||| Sbjct 262962 ATTGCCATCGAGAACGTGCAC 262982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944290779007520