Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq12 120 7e-22 seq879 104 6e-17 >seq5 Length=471533 Score = 140 bits (154), Expect = 8e-28 Identities = 150/193 (78%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 258065 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTC---ACCTTGTTCCCAAA-TCC 258119 |||||| | ||||| ||||| |||||||| ||||| | ||||| || ||||| ||| Sbjct 216974 CGGTGAATCAGGTCGCCGTTTCGAGAGAT---GGTGCACGTTACCTTCTTGCCAAAATCC 216918 Query 258120 GACGCTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTA 258179 | || |||||||| ||| |||| || || || |||| ||||||||| | || ||||| Sbjct 216917 GCCGA-GCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTA 216859 Query 258180 CACGGTCTTGAAGAAGGTGATCTGAGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTA 258239 || |||||| ||||||||||| |||||||||| |||||| | |||||| ||||| || Sbjct 216858 GACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATA 216799 Query 258240 CGCGACGAGTTGC 258252 ||||| || ||| Sbjct 216798 GGCGACCAGCTGC 216786 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 342178 TTACCAAAATCCGTGGTACCATCGAATGTCTGTTGAATTGATTCCATAGCGAAGTTTGTG 342237 || |||||||||| | |||| ||| ||||| | || || ||||| | |||||| || Sbjct 216929 TTGCCAAAATCCGCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTA 216870 Query 342238 TATCGACGATATACTGCCTTGAAAAAGGTTATCTGAGGATTTCCGGTCAGATAGACGTCC 342297 | || || || || ||||||||||||| ||||| || || |||| ||| || | |||| Sbjct 216869 TGGCGGCGGTAGACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCC 216810 Query 342298 TGTGCACCATAGCTGACCAGTTG 342320 || || |||||| |||||| || Sbjct 216809 TGCGCGCCATAGGCGACCAGCTG 216787 >seq12 Length=425388 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | |||| || || ||||| || || | Sbjct 401066 CATG-CCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAAT 401124 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || |||||||| || || || | || || || || |||||||| ||||| || | Sbjct 401125 CAGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGG---T 401181 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| ||| || ||||| || || | || || Sbjct 401182 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACG 401241 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || |||||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 401242 ACTCGACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || | || | |||| || || ||||| || |||| Sbjct 400610 CATG-CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 400668 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || |||||||| || || || | || || || || ||||| || ||||| || Sbjct 400669 CAGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGG 400728 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||| || ||||| || || | || ||| | Sbjct 400729 GGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACT 400788 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 400789 CGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 >seq879 Length=48288 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||||| |||||||| || || || | || || || ||||| Sbjct 2698 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAA 2639 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || || ||| || || || || |||||||| ||| || ||| Sbjct 2638 ATCAGACGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 2582 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || || ||||| ||||| || ||||| ||||| Sbjct 2581 TTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 2522 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 2521 ACAAAGATCTGCAT 2508 Score = 96.9 bits (106), Expect = 8e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | ||| || || || || || |||| Sbjct 4038 CATG-CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGT 3980 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| |||||||| || | Sbjct 3979 CAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---T 3923 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || || |||||||| ||| || ||||| || || | || | Sbjct 3922 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAG 3863 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 3862 ACTCAACCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179592401051156