Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 136 9e-27 seq112 84.2 5e-11 >seq5 Length=471533 Score = 136 bits (150), Expect = 9e-27 Identities = 149/193 (77%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 222451 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTC---ACCTTGTTCCCAAA-TCC 222505 |||||| | ||||| ||||| |||||||| ||||| | ||||| || ||||| ||| Sbjct 216974 CGGTGAATCAGGTCGCCGTTTCGAGAGAT---GGTGCACGTTACCTTCTTGCCAAAATCC 216918 Query 222506 GACGCTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTA 222565 | || |||||||| ||| |||| || || || |||| ||||||||| | || ||||| Sbjct 216917 GCCGA-GCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTA 216859 Query 222566 CACGGTCTTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTA 222625 || |||||| ||||||||||| ||||| |||| |||||| | |||||| ||||| || Sbjct 216858 GACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATA 216799 Query 222626 CGCGACGAGTTGC 222638 ||||| || ||| Sbjct 216798 GGCGACCAGCTGC 216786 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 313507 TTACCAAAATCCGTGGTACCATCGAATGTCTGTTGAATTGATTCCATAGCGAAGTTTGTG 313566 || |||||||||| | |||| ||| ||||| | || || ||||| | |||||| || Sbjct 216929 TTGCCAAAATCCGCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTA 216870 Query 313567 TATCGACGATATACTGCCTTGAAAAAGGTTATCTGAGGATTTCCGGTCAGGTAGACGTCC 313626 | || || || || ||||||||||||| ||||| || || |||| |||||| | |||| Sbjct 216869 TGGCGGCGGTAGACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCC 216810 Query 313627 TGTGCACCGTACGAGACTAATTGCGATATGGC 313658 || || || || | ||| | ||| ||| ||| Sbjct 216809 TGCGCGCCATAGGCGACCAGCTGC-ATAAGGC 216779 >seq112 Length=209331 Score = 84.2 bits (92), Expect = 5e-11 Identities = 246/373 (66%), Gaps = 17/373 (5%) Strand=Plus/Minus Query 333626 GTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC--CACGTGGTCTTC 333683 |||||| | ||| ||||| ||| | ||||||||||| | ||| ||| ||| | Sbjct 130990 GTCCTTGGTCTTGACGCCCTCCAGGTATCCGGGCTCGGGCAGCTTGAACACCAGGTTGGC 130931 Query 333684 GTCTCGGTAAGGGCGTAGTA--ACTCGCTGATTCGGGACGCTT---CTTCACGAACTCGG 333738 || ||| || ||||||| ||| | | ||||| ||| ||| || |||||| Sbjct 130930 GTT--GGTGAGCTCGTAGTACGACTTG--GCCTCGGG---CTTGGCCTTGACAAACTCGC 130878 Query 333739 ACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGC 333798 || || ||||||||| |||||| |||| | || | || || || || Sbjct 130877 TGAGGTTGCCCTTGTACACGCGCAGCTTGCGGTTGCAGTAGTCA---ATGATGTGGGAGC 130821 Query 333799 AAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGT 333858 | || ||| ||||| ||||||||||| ||||| || | | || ||| || | || Sbjct 130820 ACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACGATGATGGCGGACACGCCCGTCTGGC 130761 Query 333859 TGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGT 333918 ||| |||||| || ||||||| | ||||| || | |||||||| ||||||| Sbjct 130760 TGACCAGGTAGTCCTCCAGCCACTTGACGTTCTTGACGTCCAAGTGGTTGGTTGGCTCGT 130701 Query 333919 CAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCC 333978 | || || || | | | ||||| ||||| | || || || || || ||||| |||| Sbjct 130700 CCAGCAGCAGGATGTCGGGGTTCATCAGCATGGTGCGCGCCAGGGCCAGCTTCATCTTCC 130641 Query 333979 ACCCTCCTGAAAG 333991 | || || || || Sbjct 130640 AGCCGCCGGACAG 130628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102822036073700