Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1341 120 4e-22 seq282 82.4 9e-11 >seq1341 Length=23566 Score = 120 bits (132), Expect = 4e-22 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| | ||||||||||| |||||||| || || |||||| || || Sbjct 13793 GGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGCCC 13852 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | || || || || ||||||||| Sbjct 13853 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAAGAAGAT 13912 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225 ||||| || ||| ||||| | || ||||| || ||| | | || || | | Sbjct 13913 GCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAGCA-CTCG--TTGCCGGTGAT 13969 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||||| | ||||||||||||||| || ||| || |||| ||| | ||| | | || Sbjct 13970 CCACTTGAGCGCCCACTGCGCCTTGCGCTTGATGCAGGGGATGGTGTCGATGGAGTGGAA 14029 Query 126286 GAGTTCCTTCTT 126297 ||| | ||||| Sbjct 14030 GAGCTTATTCTT 14041 >seq282 Length=131332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 172022 TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATC 172081 || ||||| ||||||||||| | |||| || ||||| |||| ||| || ||||| || Sbjct 51845 TCGCCGTGGTGGTAGGCCGAGTGCTCCGACACGTACGCGGCCAGCTGCGCGACCTTGATG 51904 Query 172082 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGG 172141 || | ||||||||| | |||| | || |||| || ||| | ||| ||||||||| Sbjct 51905 TCCTTCTTGAGGTTGCGCTTGAAGGAGGCGTACAGGATCTTGCGCTGACCCGGCTTGAGG 51964 Query 172142 CCGTCGGCCATGTGCGCGATGGAACGCT 172169 ||||| || | | |||||| |||| Sbjct 51965 CCGTCCATCACGCTGGGGATGGAGCGCT 51992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597322970694160