Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 145 8e-30 seq879 140 4e-28 seq83 84.2 2e-11 >seq12 Length=425388 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 401777 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCC 401836 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||||| || | | |||||| Sbjct 401837 ATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTT 401896 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || || |||| ||| | | | ||||| ||| || || || | ||||| Sbjct 401897 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGA 401955 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| |||||||| ||||| Sbjct 401956 TGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 400397 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCC 400456 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||||| || | | |||||| Sbjct 400457 ATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTT 400516 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || || |||| ||| | | | ||||| ||| || || || | |||| Sbjct 400517 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGA 400575 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| ||||| || ||||| Sbjct 400576 TGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||| || || |||||||||||||| || || | Sbjct 401081 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCC 401140 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 401141 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 401200 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || || |||| ||| | | | ||||| ||| || || || | ||||| Sbjct 401201 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGA 401259 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || || || ||||| Sbjct 401260 TGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 400625 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCC 400684 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||||| || | | |||||| Sbjct 400685 ATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTT 400744 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || || |||| ||| | | | ||||| ||| || || || | |||| Sbjct 400745 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGA 400803 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || || || ||||| Sbjct 400804 TGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| || || ||||| |||||||| || || | Sbjct 400853 ACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCC 400912 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||||| || | | |||||| Sbjct 400913 ATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTT 400972 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| || || |||| ||| | | | ||||| ||| || || || | |||| Sbjct 400973 GTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGA 401031 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| ||||| || ||||| Sbjct 401032 TGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 402005 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCC 402064 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || ||||| || || ||||||||||| Sbjct 402065 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 402106 >seq879 Length=48288 Score = 140 bits (154), Expect = 4e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| || |||||| ||||| ||||| |||||||| || || | Sbjct 4022 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA 3963 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||| | || | || ||||||| Sbjct 3962 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3903 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || || |||| ||| | | | ||||| || || || || | ||||| Sbjct 3902 TCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGAT 3844 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || |||||||| || ||||| ||||| Sbjct 3843 GGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| || |||||| || || ||||| || ||||| || || | Sbjct 2722 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA 2663 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 2662 TCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2603 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || || |||| ||| | | | ||||| || || || || | ||||| Sbjct 2602 TCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGAT 2544 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| |||||||| ||||| Sbjct 2543 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 >seq83 Length=234864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| ||||| ||||| |||||||| || || | Sbjct 63334 CGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA 63275 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| || || || ||||| ||||||||||| Sbjct 63274 TCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTC 63234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543184946763680