Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq135 84.2 2e-11 >seq2 Length=533353 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 93966 CGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGC 94025 |||||| ||| ||| || | ||||| |||||||| || || |||||| || | ||| Sbjct 429202 CGACTCGATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCGTCATCTCCAAGTGCGC 429143 Query 94026 GGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTAC 94085 || || ||||| | | ||| || | || |||| ||| || ||||||||||| || Sbjct 429142 TGGCGGCATCGGCCTGTCCCTGCACAACATCCGCGCCACGGGCTCGTACATCCGCGGCAC 429083 Query 94086 CAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTA 94145 ||| ||||||||||||||| || |||| ||||| || ||||||||| || | || | || Sbjct 429082 CAACGGCACCTCCAACGGCATCATCCCCATGCTGCGCGTCTTCAACGACACCGCCAGGTA 429023 Query 94146 CG 94147 || Sbjct 429022 CG 429021 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 |||||||||||||| || || | | | ||||| | ||||| | || | ||||||||| Sbjct 428779 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATGTACATTGAGCCCTGG 428720 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 ||| | |||||| | ||| |||||||||| |||||||||||||| || || | | Sbjct 428719 CACTCTGACGTGTTTGACTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGC 428660 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || | |||||||||||||| || ||| | || ||||| || ||| Sbjct 428659 GCGCGCGACCTCTTCTACGCGCTGTGGATCCCCGACCTATTCATG 428615 Score = 105 bits (116), Expect = 7e-18 Identities = 240/367 (65%), Gaps = 3/367 (1%) Strand=Plus/Minus Query 95166 CACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCA 95225 || ||||||| | ||| | || ||||| |||||| ||| | || | ||| |||| Sbjct 425684 CAGCTCCAACATCTACGTGCGCCGCGTGCTGAGCGGGGAGTTCACAGTGGTGAACCAGCA 425625 Query 95226 CCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCT 95285 ||| || | ||||| || |||| |||||| | ||| ||||||||| | ||| | Sbjct 425624 CCTGCTGCACGACCTCTCGCGCATGGGCGTGTGGAGCCCCAACGTCAAGAACGAGCTGGT 425565 Query 95286 ACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTA 95345 ||||||||| ||| ||| | | | | || || || || | ||||||||||| Sbjct 425564 GGCGGCCAACGGCAGCGTGCAGGAGCT---GGACATCCCCGACAACCTAAAGGCGCTCTA 425508 Query 95346 CAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCC 95405 |||||| || ||||||||| ||||||| | | | ||| ||||| | |||||| | Sbjct 425507 CAAGACGGTCTGGGAGATCAAGCAGCGCACGCTGGTGGACATGGCGGCGGACCGCGGCGC 425448 Query 95406 CTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAAT 95465 | |||| |||||| ||| ||| |||| ||| || | Sbjct 425447 GTACATCGACCAGAGCCAGTCGTTCAACGTGTTCATGAGCGACCCCAACTTCGGCAAGCT 425388 Query 95466 AACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCG 95525 || || || || |||| |||| | ||||| ||||||||||| ||||| || |||| Sbjct 425387 CACCTCGCTGCACTTTTACGCGTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTGCG 425328 Query 95526 AACCAGG 95532 || ||| Sbjct 425327 CACGAGG 425321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 94454 AGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCA 94513 |||||||| | ||| |||| | ||||||||||| || | |||| ||| | | || Sbjct 427926 AGCTGTGGTTTGCCATCATGGAGGCGCAGGTGGAGACCGGCAACCCCTTCATGCTCTACA 427867 Query 94514 AGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATC 94573 ||||| | |||| |||||||||||||||| |||| || |||||| |||| || | Sbjct 427866 AGGACAGCGCCAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTGCTCCAACC 427807 Query 94574 TGTGCACCGAGATTGTCGAGTATACTTCTCC 94604 ||||||| ||||| ||||||| || || || Sbjct 427806 TGTGCACAGAGATCATCGAGTACACCTCACC 427776 >seq135 Length=196152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 29117 GATGGTCGACGGCCCGAACTGGCGTTCGATGTTGTTCGACACGACCCCGATGTCTCGCTG 29176 ||| | |||| | ||||||| ||| ||||||||||| || | ||| || | |||| | Sbjct 39238 GATCGCCGACAGGCCGAACTTGCGCTCGATGTTGTTAGAGAGGACACCCACGTCTTCGGG 39179 Query 29177 GTTGTAGAGTTTCTGCACA-AC---CTTGATGACCGTGCTCTTCCCAGTCCCGGCGACCC 29232 | | | | || ||||| || | ||| || ||| ||| || || |||||| | Sbjct 39178 CTCGAAAAAGTTG-GCACAGACGCGCATGAGGAGCGTCGACTTGCCCGTGCCGGCGTGGC 39120 Query 29233 CTTTGAGGAAGGGGATGACCTGCCACGAGTCCTTCTCGTTGACCTCGTAGAAGAGTCGGC 29292 |||||| ||| |||||||||||||| | ||||| || |||||| || || || |||| Sbjct 39119 CTTTGAAGAAAGGGATGACCTGCCATGCATCCTTGTCTCCGACCTCATACAACAGGCGGC 39060 Query 29293 CTATGAAAACGAAGACCCA 29311 | | ||| ||| | | ||| Sbjct 39059 CAACGAAGACGTACAGCCA 39041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494697833067920