Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3865 794 0.0 seq2255 547 8e-151 seq292 87.8 2e-12 seq721 86.0 8e-12 >seq3865 Length=1303 Score = 794 bits (880), Expect = 0.0 Identities = 778/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||| ||| | ||| |||||||||||||| || ||||| |||||||| |||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 || | ||||||||||| | ||| ||||| ||||| | |||||||||||| ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGT-GCTAACACCAAG 7707 | | || |||||||||||||||||||| |||||||| ||||| || | ||| ||| | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAA-ACCTAA 1093 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 ||||||||||||||| || | || ||||| || || | ||||||||| | ||||| || Sbjct 1092 AGCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 1033 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 ||||||||| |||||||||||||| || | |||||||||||| ||||||||||| ||||| Sbjct 1032 GTTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGAT 973 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || ||||| ||||||||||| |||||| ||| || || ||||| Sbjct 972 GTTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGT 913 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||||| | | |||||| || || | ||||| ||||| ||| ||| | |||||| Sbjct 912 TGTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACC 853 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007 |||||| |||||||| || || | ||||||||| |||||||| ||||||||||| || || Sbjct 852 ACCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGC 793 Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067 |||||| || | |||| ||||||| |||||||| || || | ||||||| |||||||||| Sbjct 792 TTGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAA 733 Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127 ||||||||||||| ||| |||| | ||| || |||| || || |||||||| ||||| Sbjct 732 TGAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGA 673 Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187 ||| |||||| |||||| ||||||||||||| |||| |||| | |||||| |||||||| Sbjct 672 GTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACC 613 Query 8188 CATGTATGCAT-AGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGT 8246 |||||| ||| | | ||| | | ||||||| | | | | |||| |||||||||||| Sbjct 612 CATGTA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGT 554 Query 8247 TGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAG 8306 |||| | |||||| || | ||| || |||||||| | || |||||||| | |||||||| Sbjct 553 TGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAG 494 Query 8307 CGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAG 8366 ||||||||| ||| | ||||||||||| ||||||||||| || || | | ||||||| Sbjct 493 CGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAG 434 Query 8367 CGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGA 8426 || ||||||||||| ||||| ||||| || |||||||| || |||||||||| ||||| Sbjct 433 AAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGA 374 Query 8427 A-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATAC 8485 | ||| || | || | | | ||||||||| | ||||| |||||||||| || Sbjct 373 ATACAGAT-GTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTAT 315 Query 8486 AGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | ||| || | || || || | ||| | |||||| Sbjct 314 AAACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 >seq2255 Length=6208 Score = 547 bits (606), Expect = 8e-151 Identities = 742/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || ||||||||||| || ||||| || |||||| ||||| || Sbjct 1336 AGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAACGTTCATGCGGTTGGTCT 1277 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||||||||| | |||||||| || || |||||||| Sbjct 1276 TGAGCAGCCATCCAAGCACGAATACCTTCATTAAGAAGGATGTTTTTAGTGTAGAACGTT 1217 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 ||||||||||| || || ||||| | || ||||||||||| ||||| ||||| | |||| Sbjct 1216 TCGAACTCTGGGTCTTCTGCTGCACGAATTTCTTGTGAAACGAAGTCGTAAGCACGTAAG 1157 Query 6442 GTTAAGTGCAAGACCAATAATACCAAT-GCTAGAGGTCCAAAGACCCATAACAGGAACAA 6500 |||| ||| | |||||| | |||||| ||| || |||| | ||| |||| || || | Sbjct 1156 TTTAA-TGCTAAACCAATTACACCAATAGCT-GACATCCATAAACCAGTAACTGGTACGA 1099 Query 6501 ACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACC 6560 | | ||| ||||| |||| |||||| || || ||| || | ||| ||||| ||||||| Sbjct 1098 ATAACATGAAGAAGTGTAACCAACGTTTGTTTGAGAAAGCAACACCGAAGATTTGAGACC 1039 Query 6561 AGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCT 6620 ||||||| || || || ||||| || || || || ||| |||| || || | || || Sbjct 1038 AGAAACGGTTTGCAGTAACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTGAATGCAC 979 Query 6621 TGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAA 6680 ||| || || | ||||| |||||||| || || || || |||||||||||||||| Sbjct 978 GGAATGTGTTCGCACCGTCACCGTCTTCAAATAATGTGTTTTCAACAGTAGCACCGTGAA 919 Query 6681 TAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGA 6740 ||||||| | || || ||||||| | ||| || ||||||||||| || || ||||| | Sbjct 918 TAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTAA 859 Query 6741 GCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAA 6800 |||||||||||||||| ||||| | ||| | | ||| ||||| || || |||||||||| Sbjct 858 GCGTCCAGTTGTGGAACCCCTGGAAGAATAAGATGAAACGGAAGATTGCGGCAACACCAA 799 Query 6801 ACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAA 6860 | || ||||||||||||| || || || | ||| || || | || || || | Sbjct 798 AACTAGGAGCAAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAAAACTGAAGTGA 739 Query 6861 AGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTG 6920 | |||||||| ||| |||| || || || || ||||| ||||| | ||| ||||| Sbjct 738 ATACAGCAATAGGAGCAGAGAATGCAATAGCGTTGTATGGACGTAAGTTAACTGAACGTG 679 Query 6921 CGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 |||| ||||| || || | ||||||||| || | |||| | ||||| | || | || Sbjct 678 CGATTTCAAATTGACGTAACATGAAACCAATTAAACCAAATGAACCGTGTAAAGCAATAA 619 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 ||| ||||| || |||||||| ||| || || || || |||||||| ||||||| Sbjct 618 AAGCCCATAAACCGCCAAGTTGACACCAACGTGTAAAGTCACCTTGAGCTTCAGGACCCC 559 Query 7041 AT-AGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGG 7099 || |||| || || || || | | | || || || || ||||||||||| | | Sbjct 558 ATAAGAATAA-TAAAGAGTGAGCCATGCTATTTGCTGGTGTAGAAACAGCAGCAGTTAAG 500 Query 7100 AAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAA 7159 || ||||| || || | || |||| ||| | ||||| |||||||| || || ||| Sbjct 499 AAGTTACAACCTTCTAAGTAAGAAGTAGCTAAGCCGTGTGTGTACCAAGAAGTAACAAAA 440 Query 7160 GTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCT 7219 || || || || | |||||| || | ||| | ||||||| || || || | | ||| Sbjct 439 GTAGTACCAGTTAACCAACCACCTACTGCGAAGTAAGCACATGGTAATAGTAATAATCCT 380 Query 7220 GACCAACCAACAAAAACGAACCTATCACG-CTTAAGCCAGTCATC-GAGTACATCAAACC 7277 |||||||| || || ||||| | || | | ||| |||||| || | || |||| |||| Sbjct 379 GACCAACCTACGAATACGAAACGGTCTTGACGTAA-CCAGTCGTCAGCGT-CATCGAACC 322 Query 7278 A 7278 | Sbjct 321 A 321 >seq292 Length=128933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8212 GAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGC 8271 ||||||| | | || | |||| |||||||| |||||| | ||| || || | ||| || Sbjct 40676 GAAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAAGATGC 40735 Query 8272 TGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAG 8327 |||||||| | || |||||||| | ||||||||||||||||| || || |||| Sbjct 40736 AGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGACTACAG 40791 >seq721 Length=61483 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 10242 ATCGCTCGTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATC 10301 |||||| ||||| || | ||| |||||||| | ||| || | |||||| ||||||| Sbjct 39737 ATCGCTGGTGGGGTACGCAACGCAGGTCAGGACGAAGCCGTTGCCAATCTGGCCATCATC 39678 Query 10302 AAGGAACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGA 10361 ||||| || || || || || || || || | || ||||| || || || || Sbjct 39677 CAGGAAGGACTGGTCAGACTGGTCGACGGTGCCGGCCTCGACCTTGCCAGCGCAGCTTGA 39618 Query 10362 ACAGGCACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTC 10406 |||||||| || ||||| |||||| ||||||||||| || || Sbjct 39617 GCAGGCACCGGCACGGCAAGAGTAGGGCAGGTCAATGCCAGCCTC 39573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622092900550880