Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq310 136 5e-27 seq1341 116 5e-21 seq282 91.5 2e-13 seq135 87.8 2e-12 >seq310 Length=124157 Score = 136 bits (150), Expect = 5e-27 Identities = 230/331 (69%), Gaps = 8/331 (2%) Strand=Plus/Plus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| |||||||| ||| || || | ||| || | || |||||| | Sbjct 85284 GCCGCGGCGGCCCGCGAGGATGGCAGCCTCGTTCAGCAAGTTGGCGAGGTTGGCACCGGC 85343 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 |||||| | || || | |||| | | |||| |||||| ||| ||| |||||||| Sbjct 85344 GAAGCCGGGGGTACGCATGGCGACCTCCTTGAGCTCCACATCCTCACCCAGCTTCTTGTT 85403 Query 12638 TCGGGCGTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTG----GGTAGGGACACGG 12693 ||||||||||| | |||| | ||| || ||| ||| || ||| |||| Sbjct 85404 GCGGGCGTGGACCTTGAGGATCTCCCAGCGGCC-CGC---CTGGTCAGGCAGGTCGACGG 85459 Query 12694 TGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGT 12753 || || ||||| ||||| || ||||| || |||||| ||| ||||| ||| |||| Sbjct 85460 AGACCTGGCGATCGAAGCGGCCCGGGCGCAGCAGGGCGGGGTCTAGGATGTCAGCACGGT 85519 Query 12754 TCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGA 12813 | || || || ||||||| ||| || || | | |||||||| |||||||| || | | Sbjct 85520 TGGTGGCGGCAATGACAATGATACCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTGAGCA 85579 Query 12814 GTTGATTGATGGTTTGTTCACGTTCATCATT 12844 | || || | || || ||||| || || || Sbjct 85580 GCTGGTTCAGCGTCTGCTCACGCTCGTCGTT 85610 >seq1341 Length=23566 Score = 116 bits (128), Expect = 5e-21 Identities = 179/253 (71%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||||| |||||||| || || |||||| || || Sbjct 13794 GCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGCCCG 13853 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||| Sbjct 13854 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAAGAAGATG 13913 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA-GCG-GGACTTTGTATCAA 127697 ||||| || ||| ||||| | || |||||||| ||| | || | | || | Sbjct 13914 CCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAGCACTCGTTGCCGGTG-----A 13968 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||| | ||||||||| ||||| || ||| || |||| ||| | ||| | | | Sbjct 13969 TCCACTTGAGCGCCCACTGCGCCTTGCGCTTGATGCAGGGGATGGTGTCGATGGAGTGGA 14028 Query 127758 AGAGTTCCTTCTT 127770 |||| | ||||| Sbjct 14029 AGAGCTTATTCTT 14041 >seq282 Length=131332 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 || ||||| ||||||||||| | |||| ||| ||||| |||| |||||| ||||| || Sbjct 51845 TCGCCGTGGTGGTAGGCCGAGTGCTCCGACACGTACGCGGCCAGCTGCGCGACCTTGATG 51904 Query 176102 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGG 176161 || | ||||||||| | |||| | || |||| || ||| | ||| ||||||||| Sbjct 51905 TCCTTCTTGAGGTTGCGCTTGAAGGAGGCGTACAGGATCTTGCGCTGACCCGGCTTGAGG 51964 Query 176162 CCGTCGGCCATGTGTGCGATGGAACGCT 176189 ||||| || | | |||||| |||| Sbjct 51965 CCGTCCATCACGCTGGGGATGGAGCGCT 51992 >seq135 Length=196152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895 || ||||||| ||| ||| | || |||||||| || |||| |||||||||||| || Sbjct 154343 CGTAACTCCACAAACTCCCACACGTCGGCGTGCCATGGCTCCAAGTACACCGCGATCGAG 154284 Query 116896 CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 |||||||| || | ||||| ||||| || || |||| || || ||||| Sbjct 154283 CCCTTGCGCTTGCCCGATTGGTTGCAATACCGTGCGGTCTCGTTGAACACCTTGAGCATG 154224 Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACA 117015 || | ||| || || || |||| || || | | || || || ||||| | || Sbjct 154223 GGCACGATGCCGTCGGACCGGCCGTTGGTGCTCATGATGCGCGAGCCCTTGGCACGGATG 154164 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | || ||||| ||| || || || |||||||| |||| || ||||||| Sbjct 154163 TTGCTGACGTGCACACCGATGCCGCCAGCCCACTTGGAGA--TGCGCGCACT 154114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613475742418320