Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1341 123 4e-23 seq2 104 4e-17 >seq1341 Length=23566 Score = 123 bits (136), Expect = 4e-23 Identities = 123/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| |||||||||||||||| |||||||| || ||||||| ||||||||| | | | || Sbjct 13790 GCAGGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAG 13849 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAA 160040 || ||||||| || ||| |||||||| || |||| ||| || | ||||| || | Sbjct 13850 CCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCGCTGAAGA 13908 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 |||| ||||| || |||||||||||||| || | ||| Sbjct 13909 AGATGCCCTCAACCGCCGCAAACGCCACCAGGCGCTC 13945 >seq2 Length=533353 Score = 104 bits (114), Expect = 4e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| |||||||| ||||| |||| | ||||| || | || Sbjct 425330 CAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCACGCGTAAAAGTGCAGCGAGGTGAG 425389 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| | |||||||||| |||| | ||| | |||||||| ||||||||| | | Sbjct 425390 CTTGCCGAAGTTGGGGTCGCTCATGAACACGTTGAACGACTGGCTCTGGTCGATG-TACG 425448 Query 204004 CGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| || || || ||||| | | | || |||| |||||||| ||||||||| Sbjct 425449 CGCCGCGGTCCGCCGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCAGACCGTCTTG 425507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 204239 GTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATG 204298 ||| |||| || || |||||||||||||| ||||| ||||||||| || |||||| Sbjct 426049 GTGTATGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGGCTGGTGCTGGCGGTAGGCATG 426108 Query 204299 GGAGCCAGGAGCAGGGAGTTGCGCACACCGT 204329 || |||| ||||| |||||||||||||||| Sbjct 426109 GGCGCCACCAGCAGCGAGTTGCGCACACCGT 426139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795114428417120