Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq879 158 1e-33 seq12 147 2e-30 seq83 84.2 2e-11 >seq879 Length=48288 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 2722 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA 2663 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||||||||| | || | || ||||||| Sbjct 2662 TCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2603 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||||| ||||| ||| | | | ||||| || || || || | ||||| Sbjct 2602 TCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGAT 2544 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || |||||||| ||||| Sbjct 2543 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 Score = 149 bits (164), Expect = 7e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| || || |||||||| | || ||||| | Sbjct 4022 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA 3963 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| || | ||||||||||| | || | || ||||||| Sbjct 3962 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 3903 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||||| ||||| ||| | | | ||||| || || || || | ||||| Sbjct 3902 TCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGAT 3844 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| |||||||| || || ||||| ||||| Sbjct 3843 GGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 2494 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA 2435 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| || | ||||||||||| Sbjct 2434 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 2394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| ||||| |||||||| | || ||||| | Sbjct 3264 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 3205 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 3204 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 3164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| ||||| |||||||| | || ||||| | Sbjct 3794 CGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 3735 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 3734 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 3694 >seq12 Length=425388 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| ||||| |||||||| | Sbjct 401764 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 401823 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| || || || | |||||||||||||| | Sbjct 401824 CCAGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGG 401883 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| |||||||| ||||| ||| | | | ||||| ||| || Sbjct 401884 GGATACCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCG 401942 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||||||| ||||| ||||| || || |||||||| ||||| Sbjct 401943 ACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 141 bits (156), Expect = 1e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| ||||| ||||| || | Sbjct 401068 TGCCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAG 401127 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || |||| |||||||||||| | | Sbjct 401128 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGG 401187 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||||| ||||| ||| | | | ||||| ||| || Sbjct 401188 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCG 401246 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||||||| ||||| ||||| || || || || || ||||| Sbjct 401247 ACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| ||| |||||| ||||| |||||||| | Sbjct 400840 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 400899 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| || || | ||||||||||||| | Sbjct 400900 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGG 400959 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| |||||||| ||||| ||| | | | ||||| ||| || Sbjct 400960 GGATACCCTCCTTGTCTTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCG 401018 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| ||||| || || ||||| || ||||| Sbjct 401019 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 400397 ACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCC 400456 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| || || || | |||||||||||||| || | | |||||| Sbjct 400457 ATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTT 400516 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||||| ||||| ||| | | | ||||| ||| || || || | |||| Sbjct 400517 GTCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGA 400575 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || || ||||| || ||||| Sbjct 400576 TGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| ||||| |||||||| | Sbjct 400612 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 400671 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| || || || | |||||||||||||| | Sbjct 400672 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGG 400731 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| |||||||| ||||| ||| | | | ||||| ||| || Sbjct 400732 GGATACCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCG 400790 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| ||||| || || || || || ||||| Sbjct 400791 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| ||||| |||||||| | Sbjct 401992 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 402051 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| | || || ||||||||||||||||| |||| |||||||||||| Sbjct 402052 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 402106 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| ||||| |||| || |||||| ||||| |||||||| | Sbjct 401296 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 401355 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| | || || |||||||||||||| || |||| |||||||||||| Sbjct 401356 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 401410 >seq83 Length=234864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| ||| ||| || |||||||||||||| | || ||||| |||| || Sbjct 62857 CACCAAGTGCAACGTAGACTCTTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCGTCTTC 62798 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||||| || || || | |||||||||||| Sbjct 62797 AAGCTGCTTGCCTGCAAAGATTAGGCGCTGCTGGTC 62762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565209417401040