Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1341 165 8e-36 seq12 158 1e-33 seq879 149 6e-31 seq83 87.8 2e-12 >seq1341 Length=23566 Score = 165 bits (182), Expect = 8e-36 Identities = 182/242 (75%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 |||||| ||||||||||| |||| ||||||||| | || ||||| |||||| ||| || Sbjct 13787 CAAGCAGGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGT 13846 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | ||||||||||||||||| || |||||||| || |||| | ||| ||| || Sbjct 13847 AAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAA 13906 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| |||||| || ||||| || ||||||||||||||| |||| | || |||| Sbjct 13907 GAAGATGCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAA---GCACTCGTTGCC 13963 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 || |||||| |||||||| | ||||| |||| ||| || || || ||||||| Sbjct 13964 GGTGATCCACTTGAGCGCCCACTGCGCCTTGCGCTTGATGCAGGGGATGGTGTCGATGGA 14023 Query 133131 GT 133132 || Sbjct 14024 GT 14025 >seq12 Length=425388 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| | | Sbjct 400840 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 400781 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 400780 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400722 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | |||||||| |||||||| || | ||||| || |||||||| Sbjct 400721 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||||| || | |||||| Sbjct 400661 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400613 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| | | Sbjct 401068 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 401009 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 401008 GACACCATTGACAACG-TCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCA 400950 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| |||||||| || | ||||| || |||||||| Sbjct 400949 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400890 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||||| || | |||||| Sbjct 400889 CATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400841 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || |||||| | | Sbjct 401992 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401933 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 401932 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 401874 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | |||||||| |||||||| || | ||||| || |||||||| Sbjct 401873 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACACTGGCTGACTACAA 401814 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||||| || | |||||| Sbjct 401813 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 401765 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| | | Sbjct 400612 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 400553 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 400552 GACACCATTGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCA 400494 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | |||||||| |||||||| || | ||||| || |||||||| Sbjct 400493 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAA 400434 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| |||||||||||| || | ||||| Sbjct 400433 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400386 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 401296 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401237 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 401236 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 401178 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | ||||| || || ||||| Sbjct 401177 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAA 401118 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| |||||||||||| || | || ||| Sbjct 401117 CATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGTGGC 401069 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | ||| ||||| |||||||| || | ||| Sbjct 402118 GGCATTCCCCCAGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGC 402059 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | |||||||| |||||||||||| || | Sbjct 402058 ACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGC 401999 Query 38466 GGCGGC 38471 |||||| Sbjct 401998 GGCGGC 401993 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 401422 GGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 401363 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | || ||||| |||||||||||| || | Sbjct 401362 ACGCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGC 401303 Query 38466 GGCGGC 38471 |||||| Sbjct 401302 GGCGGC 401297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCTC 133247 |||||||| ||| |||||||| ||||| ||||| || ||||| ||||| | | ||||| Sbjct 262993 TACATTTCGCTGTGCACGTTCTCGATGGCAATTTGGAAACCGTAGAAAGCGC-GTGCCTC 262935 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 |||||| | || | |||||| | |||| || || ||||||||||| Sbjct 262934 AGGCACCTGAATGTCGTTCATGAAACGTGCAGCCAGGTTCTCAAGCACGATGCCGTCTGA 262875 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTC 133355 || ||||| || |||| ||||| ||||||||| ||||||| | ||| Sbjct 262874 AGCTGCGAAGAACGCCAACACGTACTTGATGAACCGGCGCTCATCGTC 262827 >seq879 Length=48288 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || |||||||||||||| | || || ||| | | Sbjct 3808 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCT 3867 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 3868 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 3926 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 3927 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAA 3986 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| | |||||||| |||||||||| || | |||||| Sbjct 3987 CATTCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 4035 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| | | Sbjct 2508 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCT 2567 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 2568 GACACCATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 2626 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 2627 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAA 2686 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| || | || ||| Sbjct 2687 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 2735 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||||||||| ||||| | ||||||||| |||||||| || | ||| Sbjct 4546 GGCATTCCCCCGGACCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 4605 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | |||||||| |||||||||| || | Sbjct 4606 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGT 4665 Query 38466 GGCGG 38470 ||||| Sbjct 4666 GGCGG 4670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| ||||| | ||| ||||| |||||||| || | ||| Sbjct 2382 GGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGC 2441 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || ||||||||||||||| ||||| | || ||||| |||||||||| || | Sbjct 2442 ACGCTGGCCGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGC 2501 Query 38466 GGCGGC 38471 || ||| Sbjct 2502 GGTGGC 2507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || |||| |||||||| |||||||| || | ||||||| Sbjct 3686 TCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCC 3745 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| | |||||||| |||||||||| || | || | Sbjct 3746 TGGCTGACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGTG 3805 Query 38470 GC 38471 || Sbjct 3806 GC 3807 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| |||| ||||| || |||| |||||||| |||||||| || | ||||||| Sbjct 3156 TCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCC 3215 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||||||||| ||||| | || ||||| |||||||||| Sbjct 3216 TGGCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 3264 >seq83 Length=234864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| ||||| | || ||||| |||||||| || | ||| Sbjct 63222 GGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGC 63281 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||| || ||||| | || ||||| |||||||||| || | Sbjct 63282 ACCCTGGCTGACTACAACATTCAGAAGGAGTCAACACTGCACCTGGTGCTGCGCCTGCGC 63341 Query 38466 GGCGGC 38471 || ||| Sbjct 63342 GGTGGC 63347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500147153639680