Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq320 199 5e-46 seq238 143 3e-29 >seq320 Length=121865 Score = 199 bits (220), Expect = 5e-46 Identities = 461/690 (67%), Gaps = 6/690 (1%) Strand=Plus/Minus Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| || || ||||| | || || || || || | || || | | ||| Sbjct 115323 GTGGAGAAGACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTACGGGGGATGAGCACCGTC 115264 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | || ||| || || || || || ||||| || | ||||||| || | |||| Sbjct 115263 ATCACGCCGCCCGCCGTCTCCAGACCCAGCGACAGCGGCGCTACGTCCAGCAGCAGCAGG 115204 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || || || || || ||||| | ||| || || ||||||| || ||||| Sbjct 115203 TCCTGCACCTTCTCACCGCCCTCGCCCGTCAGGATAGCCGCCTGGACCGCAGCGCCGTAG 115144 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || |||||||||||||| |||| || || || || || ||||| || | ||| Sbjct 115143 GCAACGGCCTCATCGGGGTTGATCGACTTGTTGAGCTCCTTGCCGTTGAAGAATTCCTGC 115084 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT 7168 | || ||| | || ||||| || ||||| || || |||| |||| || | ||| Sbjct 115083 AGCAGCGATTGCACCTTGGGGATACGCGTCGAGCCGCCCACCAGCACGACGTCGTGCACG 115024 Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 | || || ||||| | ||| || || || || || || ||||| || || ||| Sbjct 115023 GTGCTCTTGTCCATCTTGGCGTCGCGCAGGCACTTCTCAACGGGGTCCATGCACTTGCGG 114964 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || | |||||| ||||| |||||||| || || ||||| ||||| || ||| |||||| Sbjct 114963 AAGAGGTCCATGCACAGCTCCTCAAAGCGAGCGCGGGTGATGGAGGTGGCGAAGTCAACG 114904 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || ||| | | ||| || | ||||||| || || || | || || | ||| ||||| Sbjct 114903 CCATCGAAGAGCGAGTCGAGCTCAATGGAGGTCTGCGCAGCGGAGGAGAGCGTGCGCTTG 114844 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408 |||||||| || || || | || || || || || || | || || ||| Sbjct 114843 GCGCGCTCGGCGGCGGTGCGCAGGCGGCGCAGCGCGCGGGGCGAGGTGCGCATGTCCTTC 114784 Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCT 7465 || || || | ||||| |||||| || || ||| | |||| || || || Sbjct 114783 TTGAACTTGCGCTGGAACTCGGTGCAGAAGTGGTTGACGAGGCG-CTCG--TCAAAGTCC 114727 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 || || |||| ||| || || || ||||| || ||||| || ||||| || | |||||| Sbjct 114726 TCGCCGCCCAGGTGGGTGTCTCCGGCGGTGGCCTTGACCTCGAAGATGCCCTCCTCAATG 114667 Query 7526 TTTAACAACGAAACATCAAACGTACCACCA 7555 | | || || ||||| || || || ||| Sbjct 114666 GTCAGCAGAGACACATCGAAGGTGCCGCCA 114637 >seq238 Length=145596 Score = 143 bits (158), Expect = 3e-29 Identities = 247/358 (69%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||| ||| || || |||| || | ||| ||||| | ||| Sbjct 133123 TCGAAGTCCTCACCACCCAGGTGGGTGTCACCCGACGTGGACACGACCTCAAACACACCG 133064 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | | || ||||| || || || |||||||||||||| | || | | Sbjct 133063 TTGTCAATGGTGAGGATGGACACATCGAAAGTGCCGCCACCCAGGTCAAACACAAGGATG 133004 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | | || ||| || || ||||| || || || ||||| || || || Sbjct 133003 TTCTTCTCGCCACCCTT---CTTGTCAAGGCCGTATGCAATTGCTGCCGCAGTAGGCTCG 132947 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || | || | | ||||||||||| ||| || | || || || || || || || Sbjct 132946 TTGATCACGCGCACAACGTTCAGGCCAGAAATCGTACCAGCGTCCTTTGTGGCCTGGCGC 132887 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| || || || | ||| |||| | |||| |||| || || Sbjct 132886 TGAGCGTCGTTGAAGTAGGCAGGCACAGTGATGACGGCGTGCTTGACAGTCTTGCCCAGG 132827 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 |||| || ||| | || ||||| || |||| ||| | || ||||| |||| || Sbjct 132826 TACGCCTCAGCGGTCTCCTTCATCTTCTGGAGAATCATGGCAGAGATCTCCTCAGGCG 132769 Score = 120 bits (132), Expect = 4e-22 Identities = 157/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| |||||||| | || | | ||| ||||||||||| | || | Sbjct 132390 ACTTGCGGCCGATGAGACGCTTGACGTCGTAGATCGTGCGTTTGGGGTTCACCGTTGCCT 132331 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || || |||||||| ||||||||| | | | || || ||||| ||||| | Sbjct 132330 GGTTCTTGGCAGCATCCCCGATCAGACGTTCAGTGT---CGGTGAAAGCGACATACGAGG 132274 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || | || || || ||||||||||||||||| || || || |||| | | |||| Sbjct 132273 GCGTGATACGGTTGCCCTGGTCGTTCGCAATAATCTCAACACGACCGTTCTTGTACACGC 132214 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || || || || | || |||||||| Sbjct 132213 CCACGCAGGAGTAGGTGGTGCCCAGGTCGATACCGAT 132177 Score = 114 bits (126), Expect = 2e-20 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | ||||| |||||||| ||||| || || ||| ||||||| | | || | Sbjct 137761 ACTTCCGGCCGATGAGACGCTTGATGTCAAAGACAGTATTTCTGGGGTTGACTGTTGCCT 137702 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || || |||||||| || || || | ||| || || ||||| ||||| | Sbjct 137701 GGTTCTTGGCAGCATCCCCGATGAGGCGCTCGGT---TTCGGTGAAAGCGACATACGAGG 137645 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || | || || || ||||||||||||||||| || || || |||| | | |||| Sbjct 137644 GCGTGATACGGTTACCCTGGTCGTTCGCAATAATCTCAACACGACCGTTCTTGTACACGC 137585 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || || || || | || |||||||| Sbjct 137584 CCACGCAGGAGTAGGTGGTGCCCAGGTCGATACCGAT 137548 Score = 107 bits (118), Expect = 2e-18 Identities = 239/358 (67%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || |||| || | ||| ||||| | ||| Sbjct 138506 TCGAAGTCCTCACCACCAAGGTGGGTGTCACCCGACGTGGACAAGACCTCAAACACACCG 138447 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | | || || || || || || |||||||||||||| | || | | Sbjct 138446 TTGTCAATGGTAAGGATGGACACGTCGAAAGTGCCGCCACCCAGGTCAAACACAAGGATG 138387 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | ||||| || ||||| || || | || || || || || || Sbjct 138386 TTC---TTGTCCATGCTCTTCTTGTCCAGACCATAAGCCAGCGCGGCTGCAGTGGGCTCG 138330 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || | || | | ||||||||| || || || | || || || || || || || Sbjct 138329 TTGATCACGCGCACAACGTTCAGGCCCGCGATTGTACCAGCGTCCTTTGTGGCCTGGCGC 138270 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| || || || | ||| |||| | |||| |||| || || Sbjct 138269 TGAGCGTCGTTGAAGTAGGCAGGCACAGTGATGACGGCGTGCTTGACAGTCTTGCCCAGG 138210 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 |||| || || | || ||||| || |||| ||| | || | ||| |||| || Sbjct 138209 TACGCCTCAGCAGTCTCCTTCATCTTCTGGAGAATCATGGCGGAGACCTCCTCAGGCG 138152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635100233565680