Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1341 120 4e-22 seq310 84.2 3e-11 >seq1341 Length=23566 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || | || |||||| |||||||| ||||||||| || || || Sbjct 13952 CTTCGCCGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCTTCTTCAGCGGCTCGTT 13893 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | || | |||||||||||||| || |||||||| || || |||||||||||| Sbjct 13892 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCCAACGA 13833 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| ||||||||||| | ||| || ||||| Sbjct 13832 GCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGC 13794 >seq310 Length=124157 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| ||||| || ||||| || || ||| || ||||| ||| | || || || ||| Sbjct 85468 CGATCGAAGCGGCCCGGGCGCAGCAGGGCGGGGTCTAGGATGTCAGCACGGTTGGTGGCG 85527 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || ||||||| ||||| || | | || || || |||||||| || | |||||||| Sbjct 85528 GCAATGACAATGATACCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTGAGCAGCTGGTTC 85587 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCAT-ACCACCAGCACTGCGTTGCTTTCCCAC 16063 | || || || || || || || | || || | ||||| | ||| ||||| Sbjct 85588 AGCGTCTGCTCACGCTCGTCGTTGG-TGCCACCAATACCAGTGCCGCGCGAGCGGCCCAC 85646 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG 16096 ||||||||||||||| | || || | ||| || Sbjct 85647 GGCATCAATCTCATCCACAAACACCAGGCAGGG 85679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620710571433440