Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq310 100 3e-16 seq135 95.1 1e-14 seq1341 89.7 6e-13 >seq5 Length=471533 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131075 AATGGCCGGTGGTCTCATGCAACTCGTAGCGTACGGCGCCCAGGACGTTTACCTTACTGG 131134 ||||| |||||| || ||||| || || || || ||||| |||||| ||||||| | || Sbjct 216768 AATGGGCGGTGGCCTTATGCAGCTGGTCGCCTATGGCGCGCAGGACATTTACCTGTCCGG 216827 Query 131135 TAACCCTGAGGTGACCTTCTTCCAGGCGAAATACAAGCGCCACACCAACTTCGCGATGGA 131194 ||||| || | ||||| ||| ||| | ||| ||||| ||||||||| | ||||| Sbjct 216828 CAACCCGCAGATCACCTTTTTCAAGGTGGTCTACCGCCGCCATACCAACTTCACCATGGA 216887 Query 131195 GAACATCGAGCAGACCGTCAACGG 131218 | |||||||||||| |||| || Sbjct 216888 GTCCATCGAGCAGACGTTCAATGG 216911 Score = 93.3 bits (102), Expect = 5e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 132045 CTCAACGGTCAGGACCGTTTCAAGGAGCAGAAGGGCAAGTACTTCAACCAGGTCCAGGCC 132104 ||||| || || ||||| ||| |||| | || |||||||||| || ||| || Sbjct 217858 CTCAATGGCCACGACCGCTTCTCCGAGCGCGACGGACGCTACTTCAACCTCGTGCAGCCC 217917 Query 132105 TACAACCACCACTCCGGTTGCCCCATGCCCGGT-ATCTACTCGTACTCTTTCGCGCTCAA 132163 ||| | |||||| | | ||| | | || |||| | ||||| ||||||||||| Sbjct 217918 TACCAACACCACGA-GAACGTCCCCTCCAAGGGCATCTGCGTCTACTCGTTCGCGCTCAA 217976 Query 132164 GCCCGAGGAGCACCAGCCCACCGGCACCTGCAACTTCTCCCGCATCGACAACGCG 132218 ||||||||| |||||||||| ||| || |||||| | || |||||||| || ||| Sbjct 217977 GCCCGAGGAACACCAGCCCAGCGGAACATGCAACATGTCGCGCATCGATAATGCG 218031 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 131662 ACTACGTCTACCTCGACACCGAGGAGCGCCGCCGCTTCGCCCAGAAGGGTCACGAGTACC 131721 ||||| ||||||| |||||||| ||| | ||||||||||| ||| |||||||||| Sbjct 217472 ACTACATCTACCTTGACACCGACGAGAGACGCCGCTTCGCGCAGGTCTCGCACGAGTACC 217531 Query 131722 TCATCGAGCAGGTCCAGCACACTGG 131746 ||||||||||| | ||| |||||| Sbjct 217532 TCATCGAGCAGCTGCAGTTCACTGG 217556 >seq310 Length=124157 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || ||||| || || || || || || || ||||||| || ||| Sbjct 85468 CGATCGAAGCGGCCCGGGCGCAGCAGGGCGGGGTCTAGGATGTCAGCACGGTTGGTGGCG 85527 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||||||| | || || || | ||||| |||||||| || ||||| |||||||| Sbjct 85528 GCAATGACAATGATACCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTGAGCAGCTGGTTC 85587 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG 11647 | |||||| |||||||| ||||||| Sbjct 85588 AGCGTCTGCTCACGCTCGTCGTTGG 85612 >seq135 Length=196152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 52496 CGAGATCTGGGTTCTGTTTCATCACGTCATTCATGTTGGGCATCACCGACTTGAACATAC 52555 |||| || ||||||||||| | | | || |||| ||| | | | || | ||| Sbjct 137643 CGAGCTCGGGGTTCTGTTTGAGGATCTGATCCATGCCGGGAAGCGCGTGTTTCAGCATCG 137584 Query 52556 TGTTGGTGAGGTGGAACATCATCGCCGAACCACCCAACATCATGATCAACTTCACCTCGG 52615 |||| |||| |||||||||| || || || |||| ||| | || | ||||| ||||| Sbjct 137583 TGTTAGTGACATGGAACATCACTGCGGAGCCGCCCACCATGAAGAGGAGCTTCAGCTCGG 137524 Query 52616 GGGCGACGCTGACCTTCGATCGATACTTCACGTAAAGCTCCTCGAATACACCATCGTAGT 52675 | || | || | || || ||||| || | ||||||||||| || | ||||||| Sbjct 137523 GCGCCATCTTGGCTTTGCCGCGGTACTTGACATGCAGCTCCTCGAACACGTCGTCGTAGT 137464 Query 52676 CATCAACATTCTCCATCACACTCTCAGACCAGCCGTCGAGCTGAATCTCAAATGGGTTAT 52735 | || | ||||| | || || ||||||||||| |||| | ||||| |||| Sbjct 137463 CGTCCAGGTTCTCGTGGATGCTGTCCGACCAGCCGTCCAGCTTGACGTCAAAAGGGTCGA 137404 Query 52736 ACCTCTTATTCAGGAACTCGAGACCAGTCACACAGGCTACGAGCATTCGTCG 52787 | | |||| |||||||| || ||| || || | |||||| || || Sbjct 137403 AGCGGCCGTTCAAGAACTCGATGCCGTGCACGCATGCCATGAGCATGCGGCG 137352 >seq1341 Length=23566 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || || ||||||||||| || |||| ||| || |||||||| || | ||| Sbjct 13812 CCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGCCCGGGCATGAGGCCGCGCTTC 13871 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || |||||||||||||| || || || Sbjct 13872 TTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAAGAAGATGCCCTCAACCGCCGCAAAC 13931 Query 119634 GCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 || | || ||||| || || ||| | || || ||||||||| ||||| | || Sbjct 13932 GCCACCAGGCGCTCGGCGAAGCACTCGTTGCCGGT-GATCCACTTGAGCGCCCACTGCGC 13990 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTT 119743 ||| |||| |||||||||| || | ||||| | ||| || | ||||| Sbjct 13991 CTTGCGCTTGATGCAGGGGATGGTGTCGATGGAGTGGAAGAGCTTATTCTT 14041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588945800255600