Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1341 104 3e-17 seq161 89.7 6e-13 seq135 82.4 9e-11 >seq1341 Length=23566 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| | ||||| || || || || || || || |||||| || || Sbjct 13793 GGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGCCC 13852 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||| || |||||||| | ||| | || | |||||| || ||| ||||||||| Sbjct 13853 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAAGAAGAT 13912 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||||| || ||||||||| | ||||||||||||||| Sbjct 13913 GCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAG 13952 >seq161 Length=178624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 176852 ATCCACGACAATGCGGAGGTATTTGACACAAAGACCGAACAC-TCTATGAGGTACCTTCA 176910 |||||||| ||| ||||| |||||| || | ||||| || ||||| | |||||||| Sbjct 11485 ATCCACGAGTCTGCCGAGGTGTTTGACCCACACACCGAGCAGGTCTATAAA-TACCTTCA 11427 Query 176911 GATCTTAACGGCATGTTGTGATTCGTTCGCACACGGTGCCAATGATGTTGCCAATTCAAT 176970 || | ||||||| || | || ||||| ||||| ||||| ||||||||||| || | Sbjct 11426 AGTCGTGTCGGCATGCTGCGTGTCCTTCGCCCACGGCGCCAACGATGTTGCCAACTCGGT 11367 Query 176971 CGGACCATTTGCCGCCAT 176988 ||| || || |||| ||| Sbjct 11366 CGGCCCCTTCGCCGGCAT 11349 >seq135 Length=196152 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 50940 AGGTCTGGGTTTTGCTTGAGAACATCATTCATATTGGGGAGAGCACTCTTGAACATACTG 50999 || || ||||| || ||||| | | || ||| ||| || || || | ||| || Sbjct 137641 AGCTCGGGGTTCTGTTTGAGGATCTGATCCATGCCGGGAAGCGCGTGTTTCAGCATCGTG 137582 Query 51000 TTTGTCAAGTGGAACATCATCGCTGAACCACCCAACATCATAATGAGTTTGACCTCGGGG 51059 || || | |||||||||| || || || |||| ||| | | ||| || | |||||| Sbjct 137581 TTAGTGACATGGAACATCACTGCGGAGCCGCCCACCATGAAGAGGAGCTTCAGCTCGGGC 137522 Query 51060 GCAACATTGACCTTGCTTCTGTACTTGACATACAACTCTTCAAAGACTCCGTCATAGTCA 51119 || | ||| | |||| | ||||||||||| || ||| || || || |||| ||||| Sbjct 137521 GCCATCTTGGCTTTGCCGCGGTACTTGACATGCAGCTCCTCGAACACGTCGTCGTAGTCG 137462 Query 51120 TCTACATTCTCCATGACAGACTCCGACCAACCCTCAAGTTGGATCTCAAAGGGGTTATAT 51179 || | ||||| || |||||||| || || || | || ||||| |||| | Sbjct 137461 TCCAGGTTCTCGTGGATGCTGTCCGACCAGCCGTCCAGCTTGACGTCAAAAGGGTCGAAG 137402 Query 51180 CTTTTGTTCAGGAACTCCAAGCC 51202 | ||||| |||||| | ||| Sbjct 137401 CGGCCGTTCAAGAACTCGATGCC 137379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589950548734480